Gene detail

Detailed information of OS493_001227-T1 in Lophelia pertusa

Genomic Location: scaffold_2:6604599...6605834
NR annotation: KAJ7387878.1, Kinesin-like protein kifc1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28739	Kinesin-like protein klpA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=klpA PE=2 SV=3
Q9US03	Kinesin-like protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=klp2 PE=3 SV=1
P46875	Kinesin-like protein KIN-14N OS=Arabidopsis thaliana OX=3702 GN=KIN14N PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008313 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16796 all species →	Microtub_bd	Microtubule binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031852 all species →	Domain	Spindle pole body-associated protein Vik1/Cik1, microtubule binding domain	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47972 all species →	KINESIN-LIKE PROTEIN KLP-3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001227-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001227-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

26.2Max TPM

3.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	2.48	5.28
polyp at pH7 6	18	15	2.69	6.02
coral polyp · control treatment	16	16	5.04	26.17
coral polyp · oil and dispersant treatment	16	16	3.49	13.76
coral polyp · oil treatment	16	16	4.60	8.28
coral polyp · dispersant treatment	16	15	3.97	8.35
Polyp	10	8	1.38	4.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.02
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.29
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.92
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.76
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.69
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.95
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.34
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.72
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.44
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.01
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.