Gene detail

Detailed information of OS493_001241-T1 in Lophelia pertusa

Genomic Location: scaffold_2:6792433...6796284
NR annotation: KAJ7387891.1, hypothetical protein OS493_001241 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VZS7	Protein hobbit OS=Drosophila melanogaster OX=7227 GN=hob PE=3 SV=2
Q5SYL3	Bridge-like lipid transfer protein family member 2 OS=Mus musculus OX=10090 GN=Bltp2 PE=1 SV=1
Q14667	Bridge-like lipid transfer protein family member 2 OS=Homo sapiens OX=9606 GN=BLTP2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002345 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10351 all species →	FMP27-BLTP2_C	BLTP2/FMP27/Hobbit, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019443 all species →	Domain	BLTP2/FMP27/Hobbit, C-terminal	Interproscan
IPR045167 all species →	Family	Hobbit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15678 all species →	ANTIGEN MLAA-22-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_001241-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26405	CCDC25; coiled-coil domain-containing protein 25	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001241-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

97.1Max TPM

36.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	47.01	63.07
polyp at pH7 6	18	18	42.36	64.91
coral polyp · control treatment	16	16	32.73	53.87
coral polyp · oil and dispersant treatment	16	16	25.12	59.70
coral polyp · oil treatment	16	16	35.65	52.42
coral polyp · dispersant treatment	16	16	24.05	37.19
Polyp	10	10	49.73	97.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.27
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.94
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.54
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.77
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.47
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.84
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.88
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.42
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.43
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.99
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.85
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.09
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.26
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.80
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.42
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.74
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.92
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	97.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	81.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	71.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	66.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	48.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	46.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	38.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.83
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.15

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.