Gene detail

Detailed information of OS493_001246-T1 in Lophelia pertusa

Genomic Location: scaffold_2:6882877...6889548
NR annotation: KAJ7387896.1, hypothetical protein OS493_001246 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P83111	Serine beta-lactamase-like protein LACTB, mitochondrial OS=Homo sapiens OX=9606 GN=LACTB PE=1 SV=2
Q9EP89	Serine beta-lactamase-like protein LACTB, mitochondrial OS=Mus musculus OX=10090 GN=Lactb PE=1 SV=1
P83095	Serine beta-lactamase-like protein LACTB, mitochondrial OS=Bos taurus OX=9913 GN=LACTB PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004050 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00144 all species →	Beta-lactamase	Beta-lactamase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012338 all species →	Homologous_superfamily	Beta-lactamase/transpeptidase-like	Interproscan
IPR052794 all species →	Family	Mitochondrial Serine Protease LACTB	Interproscan
IPR001466 all species →	Domain	Beta-lactamase-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46520 all species →	SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0019216 all species →	Biological Process	regulation of lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17382	LACTB; serine beta-lactamase-like protein LACTB, mitochondrial	-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001246-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

34.2Max TPM

13.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.28	21.68
polyp at pH7 6	18	18	16.99	29.51
coral polyp · control treatment	16	16	12.90	25.40
coral polyp · oil and dispersant treatment	16	16	8.00	22.70
coral polyp · oil treatment	16	16	12.27	25.07
coral polyp · dispersant treatment	16	16	8.40	17.29
Polyp	10	10	18.75	34.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.90
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.38
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.75
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.63
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.82
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.33
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.99
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.69
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.42
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.15
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.79
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.92
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.46
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.28
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.26
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.84
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.40
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.99
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.11
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	34.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	32.51
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	24.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.97
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.68

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.