Gene detail

Detailed information of OS493_001249-T1 in Lophelia pertusa

Genomic Location: scaffold_2:6936709...6946912
NR annotation: KAJ7387899.1, hypothetical protein OS493_001249 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5FW48	Aspartate dehydrogenase domain-containing protein OS=Xenopus tropicalis OX=8364 GN=aspdh PE=2 SV=1
Q66I59	Aspartate dehydrogenase domain-containing protein OS=Danio rerio OX=7955 GN=aspdh PE=2 SV=1
Q9DCQ2	Aspartate dehydrogenase domain-containing protein OS=Mus musculus OX=10090 GN=Aspdh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007135 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03447 all species →	NAD_binding_3	Homoserine dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005106 all species →	Domain	Aspartate/homoserine dehydrogenase, NAD-binding	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31873 all species →	L-ASPARTATE DEHYDROGENASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001249-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001249-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

97TPM > 0

7Conditions

10.4Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.17	10.38
polyp at pH7 6	18	13	3.25	7.33
coral polyp · control treatment	16	15	3.33	7.46
coral polyp · oil and dispersant treatment	16	15	2.38	7.04
coral polyp · oil treatment	16	16	3.20	8.45
coral polyp · dispersant treatment	16	15	3.26	7.75
Polyp	10	7	2.81	8.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.38
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.94
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.33
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.98
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.46
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.88
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.42
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.24
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.80
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.89
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.46
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.47
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.04
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.75
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.08
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.