Gene detail

Detailed information of OS493_001264-T1 in Lophelia pertusa

Genomic Location: scaffold_2:7226473...7229960
NR annotation: KAJ7387912.1, hypothetical protein OS493_001264 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y693	LHFPL tetraspan subfamily member 6 protein OS=Homo sapiens OX=9606 GN=LHFPL6 PE=1 SV=1
Q8BM86	LHFPL tetraspan subfamily member 6 protein OS=Mus musculus OX=10090 GN=Lhfpl6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009395 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10242 all species →	L_HMGIC_fpl	Lipoma HMGIC fusion partner-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019372 all species →	Family	Lipoma HMGIC fusion partner-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12489 all species →	LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001264-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001264-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

25.4Max TPM

10.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.42	20.62
polyp at pH7 6	18	16	11.92	25.40
coral polyp · control treatment	16	16	12.07	23.05
coral polyp · oil and dispersant treatment	16	15	7.05	14.70
coral polyp · oil treatment	16	16	11.47	18.63
coral polyp · dispersant treatment	16	16	8.33	18.08
Polyp	10	10	7.36	15.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.62
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.08
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.78
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.96
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.44
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.24
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.59
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.01
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.05
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.95
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.24
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.15
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.66
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.75
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.02
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.35
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.75
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.98
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.31
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.33
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.27
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.93
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.73
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.03
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.13
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.56

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.