Gene detail

Detailed information of OS493_001266-T1 in Lophelia pertusa

Genomic Location: scaffold_2:7239850...7256426
NR annotation: KAJ7387914.1, Smg-6, nonsense mediated mRNA decay factor [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_001266-T1

ATGGCGGCCTGTTCAAGCGGGAACAGTTCATCTCTTGTGTTACGAATTACATACGACGAACTGGTCGCTTATGCCGACGAGCTAGATAAGAAGAAAGAAACAAAACACCACAAGAAGAAACATCACGGAAAATCTGAAGAAAAGGACTCCAAACCTACGAAAAATCTTGACAAGAAAGACACACCTGACGTCAGCAAGAATAGGAAAGAAGATTTTGAAAGAAAAGAAAGTGAGGTTAATGATCACAAGGATAAAGATTATCAAGGCGAGACGAAACAAGAAGCAAAGAAGGACGAAAAGAAATTGTCAGGGTCAAGACCAAGCCGACAATCATCATGTTTATATAAAGAGGACAATGTTGATGCAAAGGACAAAGGGACCGTTACCAATGGTGACAAAGTGAATAAAGTTGCTGGAAAACGCGGGGAAAAATTGAGAAAGGAGACCAAAATCGACAAGGATCATAAAGAATGTGATAATTATGAACTTGATCTGAGAGCTAGAACTGGTGGTGTTTTGAGCTTCTCTAAAGGCCCTGTTCATGTTACAGCAGAGGAATCACCCAACGATGCTAGACCAAGGGGGATAATCAAATTACCACAGGGTTTTGATTTTAATAGTCCTGACAAAAGTGAAGAAAATGAAGTATTTAAAACTGATATTTCATCCCAAAAGAGAACCACAAGTACAAACTGCAGTAGTAGATTATATGATCCAGATAATACAGCAGTACCGCAGAACAAAGAAGTTCATTTTAGCAGAGTAAATGAAGAGATTACATCACACCGAAGTGATGCTGCCTTAGACATGGAACATTGCACTGAAGAAGAAGAAAAAACTCAAATATACAATGCTCTAACTAACGAAAACTGCACTGAATGTGTGGATGTTTGGGACACCTCAATGGTAAATGAACAAGGATTTATTAACCAGACGAAAGTTGAGAAAAAGCTCAAGACCCTAAATCATAAAAAAGCTCAAAGATTACTGACAGCAGTAGCACAAAAAGAGACAATGCTGAGCAATTTGTTATCTCGAGACATGCTTGACAAGGCAGCGTTTGAAAAAATTTGTACCCTCAGTAAAGAAATCCAGGCTACCTACAAAGGTATTATGATGCTTGATATTGCTTTTTCAATTCAACAAGAAGTTGATCAGAACCTTTGGAGAAATGGATTTTATAAAGTGATTGAGACACTTCGAAAGTATGGAAAGCTCTTTTTGGGATATACAGAAAAAAAAGAAGTGCTCTCCCCAGAGGAAATTAATATCTGTCTGAAGGAATTCCTGAAAGATGCTGAGACATTTTATAAGAGTCTTCTCGAGTTGCTACAGAAGGGACATGAATTCTCAGTTCAGGATATGGTTAATCAACCAAGAAAAGCAGAAAATCTTGGAAAAAATGCTAAACTTGCACTCCTGAGCTCACACAATGTTTTAATCTGTCTTGGAGACATTGAGAGGTATCAAGGACAGTTTCAGCCAAACCAGAACTGGGCTTCCATAAGATCATGGTATCTCAAAGCTAACAAACTGGCTCCTAAGAATGGTAAACCCTACAACCAGCTGGGTGTCATTGCAGTGTTAGCCAATCGTAAGCTAGACTCTGTGTATTACTACACAAGGAGTCTTGCTGTGAGTAATGCAATCTTGACAGCAAGGGAGAAACTGACAGCTATTTTCTATGATATACAGAAGAAGGCAGATAGACTTCAAAGAATTGAGGATGAAAAGAAGGCTCGTTCAGAGCAGCAACTCCGTCAGATGAAAGGAAAGGACCATGCAGGAAGAGGAAAGGGACGGTCAGTGTTTGGAGAAGTGGCCAAGGGTCTTGGACTAATCTCTGAACACAAAGCTACTCATGGCAGGCATGAGGTATGGATCTTTGTACGTCACGGAGTCTGTAGGAGGGTTGTGCTCACTGATCATGGTAAAGTACAAGAGGTTAACTCAGCAGGTGACCCTGTCTCTGAAGCAAAGAACGAAGAACATCCTACAGACCCTGTGAAGGAAATGCCAAAGATATCTCTTCAAGAGGTCAACAAGACATTTGTGCTCCATTTTCTTTGTGCTCATGGCCTCTTGTATTCAAGAATTGGTATGGAAAGGTTGCCTACATTACAGTACCAACTTATAGGCGAGTTGCACACATTGTTAGAGTACCCAGCATGTTCTGCAATAAGCAGATCAAATCTTCTACAGATGATGGCTATCAACGTGTTTGCTATTGACAACACTGCAGTAAAAGATGCAACAGAACAGTATGTCAGAGTGGGTACACCACAAGACCAAGCCATGCATCTTTCCATTGAGATGTTTATCTTGATGCTGAAAACCTGCTGTACTCTTCTACAGAGTATAGACTTTGAAGCAAGAAACACTCATGAAGGCCTGAGTGCTCCCTTAAGGCAGTTCCTTCCTGCTGTCAAAGTGTTTGCAGACTGGATGGTATGCCATGTTGATCTGTGGCAAGTATCCTCTATTAGCACTCATAGAAATCTTTGGGAATCAGTGAGCCAGTTCACAAATGCCATATGGTATGTGGATATTGACAATCTTCATGAAGAGGATGGTGATGAGATGGTAACCTTGTATGAAGACGAATTTCTTGCTGGATTTAAGCCATTGAACACTGCCGTCAGACCATTGTGTAAAGTTTCTGATGTAGAATGTAAGAGCCTGGCTGAGGATTATCTCCGTTGTCAGTGTCTGAAGGATTTTGCTGCATTTTTGGTTTCCTTGGAGAATCCTCCATTAGAGTTTGATGATGAGAAAGGAGAGTTCTCTGCAATGATAAAAAGCACTCCAGTTTCACCAGCTAAGGAGTCACCGGGCTCAGTCATGGTTCACTTGGACACATCACAACGAGACGGACATGAGGTTTGTTACTAA

Transcript

OS493_001266-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RAK6	Telomerase-binding protein EST1A OS=Pongo abelii OX=9601 GN=SMG6 PE=2 SV=1
Q86US8	Telomerase-binding protein EST1A OS=Homo sapiens OX=9606 GN=SMG6 PE=1 SV=2
P61406	Telomerase-binding protein EST1A OS=Mus musculus OX=10090 GN=Smg6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003717 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10373 all species →	EST1_DNA_bind	Est1 DNA/RNA binding domain	Repeat	Interproscan
PF10374 all species →	EST1	Telomerase activating protein Est1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018834 all species →	Domain	DNA/RNA-binding domain, Est1-type	Interproscan
IPR045153 all species →	Family	Est1/Ebs1-like	Interproscan
IPR019458 all species →	Domain	Telomerase activating protein Est1-like, N-terminal	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15696 all species →	SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0005697 all species →	Cellular Component	telomerase holoenzyme complex	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0070034 all species →	Molecular Function	telomerase RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001266-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_001266-T1 global co-expression network