Gene detail

Detailed information of OS493_001272-T1 in Lophelia pertusa

Genomic Location: scaffold_2:7313919...7343723
NR annotation: KAJ7387920.1, Deoxynucleotidyltransferase terminal-interacting protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6H7A8	Deoxynucleotidyltransferase terminal-interacting protein 1 OS=Bos taurus OX=9913 GN=DNTTIP1 PE=2 SV=1
Q99LB0	Deoxynucleotidyltransferase terminal-interacting protein 1 OS=Mus musculus OX=10090 GN=Dnttip1 PE=1 SV=1
Q9H147	Deoxynucleotidyltransferase terminal-interacting protein 1 OS=Homo sapiens OX=9606 GN=DNTTIP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004935 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21229 all species →	TdIF1_2nd	TdIF1, C-terminal	Domain	Interproscan
PF18192 all species →	DNTTIP1_dimer	DNTTIP1 dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026064 all species →	Family	Terminal deoxynucleotidyltransferase-interacting factor 1	Interproscan
IPR049121 all species →	Domain	TdIF1, C-terminal	Interproscan
IPR041384 all species →	Domain	DNTTIP1, dimerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23399 all species →	DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08707	DNTTIP1; deoxynucleotidyltransferase terminal-interacting protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001272-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

174.5Max TPM

66.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	59.10	103.08
polyp at pH7 6	18	18	53.82	72.76
coral polyp · control treatment	16	16	89.92	174.52
coral polyp · oil and dispersant treatment	16	16	88.63	148.45
coral polyp · oil treatment	16	16	76.08	98.37
coral polyp · dispersant treatment	16	16	53.03	78.68
Polyp	10	10	34.58	58.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.08
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	99.83
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.63
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.46
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.03
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.65
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.01
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.42
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.14
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.47
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	174.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	112.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	112.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.39
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.59
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	148.45
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	126.08
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.64
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.05
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.33
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.49
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.37
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.92
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.04
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.92
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.19
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.47
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.59
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.15
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	58.91
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	52.47
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	43.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	37.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	28.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	26.70
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	26.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	24.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.05

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.