Gene detail

Detailed information of OS493_001275-T1 in Lophelia pertusa

Genomic Location: scaffold_2:7361008...7370776
NR annotation: KAJ7387923.1, DiGeorge syndrome critical region protein 14 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96DF8	Splicing factor ESS-2 homolog OS=Homo sapiens OX=9606 GN=ESS2 PE=1 SV=1
O70279	Splicing factor ESS-2 homolog OS=Mus musculus OX=10090 GN=Ess2 PE=1 SV=2
O44424	Splicing factor ESS-2 homolog OS=Drosophila melanogaster OX=7227 GN=Es2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007078 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09751 all species →	Es2	Nuclear protein Es2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019148 all species →	Family	Nuclear protein DGCR14/ESS-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12940 all species →	ES-2 PROTEIN - RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13118	DGCR14; protein DGCR14	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001275-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

27.6Max TPM

13.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.61	20.33
polyp at pH7 6	18	18	13.69	17.83
coral polyp · control treatment	16	16	13.81	20.09
coral polyp · oil and dispersant treatment	16	16	11.07	14.44
coral polyp · oil treatment	16	16	14.37	20.58
coral polyp · dispersant treatment	16	16	8.38	16.40
Polyp	10	10	16.91	27.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.97
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.40
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.06
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.00
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.61
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.27
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.56
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.83
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.64
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.68
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.76
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.84
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.92
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.22
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.82
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.59
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.33
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.64
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.44
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.24
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.51
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.41
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.38
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.81
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.01
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.03
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.28
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.98
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.95
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.34
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.97
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	27.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.84
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	22.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.77
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.28
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.34

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.