Gene detail

Detailed information of OS493_001287-T1 in Lophelia pertusa

Genomic Location: scaffold_2:7731656...7765442
NR annotation: KAJ7387935.1, hypothetical protein OS493_001287 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D273	Corrinoid adenosyltransferase MMAB OS=Mus musculus OX=10090 GN=Mmab PE=1 SV=1
Q58D49	Corrinoid adenosyltransferase MMAB OS=Bos taurus OX=9913 GN=MMAB PE=1 SV=1
Q96EY8	Corrinoid adenosyltransferase MMAB OS=Homo sapiens OX=9606 GN=MMAB PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005338 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01923 all species →	Cob_adeno_trans	Cobalamin adenosyltransferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029499 all species →	Family	Corrinoid adenosyltransferase, PduO-type	Interproscan
IPR036451 all species →	Homologous_superfamily	Cobalamin adenosyltransferase-like superfamily	Interproscan
IPR016030 all species →	Domain	Cobalamin adenosyltransferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12213 all species →	CORRINOID ADENOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008817 all species →	Molecular Function	corrinoid adenosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00798	MMAB, pduO; cob(I)alamin adenosyltransferase	EC:2.5.1.17	Cobalamin transport and metabolism	ko04980	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001287-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

36.1Max TPM

9.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.91	18.02
polyp at pH7 6	18	18	10.22	22.06
coral polyp · control treatment	16	16	9.16	21.87
coral polyp · oil and dispersant treatment	16	16	6.25	11.80
coral polyp · oil treatment	16	16	9.18	16.56
coral polyp · dispersant treatment	16	16	6.49	13.23
Polyp	10	9	13.65	36.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.70
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.32
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.86
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.71
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.06
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.73
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.97
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.56
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.29
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.13
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.55
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.91
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.47
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.68
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.32
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.43
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.96
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.38
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.85
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	36.12
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	26.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.32
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.