Gene detail

Detailed information of OS493_001354-T1 in Lophelia pertusa

Genomic Location: scaffold_3:168020...169935
NR annotation: KAJ7381238.1, DAZ associated protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008927 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11029 all species →	DAZAP2	DAZ associated protein 2 (DAZAP2)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022730 all species →	Family	DAZ associated protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31638 all species →	DAZ-ASSOCIATED PROTEIN 2	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_001354-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001354-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001354-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

153.1Max TPM

97.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	106.33	143.76
polyp at pH7 6	18	18	99.78	141.51
coral polyp · control treatment	16	16	109.76	147.73
coral polyp · oil and dispersant treatment	16	16	100.02	133.16
coral polyp · oil treatment	16	16	102.57	153.07
coral polyp · dispersant treatment	16	16	77.04	106.15
Polyp	10	10	79.51	142.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	143.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	143.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	140.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	132.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	122.26
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	118.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	117.89
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	110.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	110.44
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.94
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	99.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.83
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.85
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	133.93
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	133.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	123.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	121.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	119.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	119.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.40
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.66
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.28
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.18
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	147.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	145.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	137.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	137.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.56
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.16
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	127.71
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.38
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.72
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	153.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	134.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	125.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	123.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	120.30
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.37
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.80
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.15
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.64
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.76
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	142.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	110.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	92.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	81.14
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	70.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	70.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	67.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	64.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	55.48
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	40.38

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.