Gene detail

Detailed information of OS493_001387-T1 in Lophelia pertusa

Genomic Location: scaffold_3:557129...575016
NR annotation: KAJ7381269.1, hypothetical protein OS493_001387 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RJG7	D-ribitol-5-phosphate cytidylyltransferase OS=Mus musculus OX=10090 GN=Crppa PE=2 SV=1
A0JPF9	D-ribitol-5-phosphate cytidylyltransferase OS=Danio rerio OX=7955 GN=crppa PE=2 SV=2
E1BCH6	D-ribitol-5-phosphate cytidylyltransferase OS=Bos taurus OX=9913 GN=CRPPA PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003757 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01128 all species →	IspD	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034683 all species →	Family	Cytidylyltransferase IspD/TarI	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43015 all species →	D-RIBITOL-5-PHOSPHATE CYTIDYLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070567 all species →	Molecular Function	cytidylyltransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan
GO:0047349 all species →	Molecular Function	D-ribitol-5-phosphate cytidylyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21031	ISPD; D-ribitol-5-phosphate cytidylyltransferase	EC:2.7.7.40	Mannose type O-glycan biosynthesis	ko00515	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001387-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

15.0Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.26	7.33
polyp at pH7 6	18	17	4.45	6.44
coral polyp · control treatment	16	16	6.29	10.82
coral polyp · oil and dispersant treatment	16	16	4.77	14.96
coral polyp · oil treatment	16	16	6.05	8.82
coral polyp · dispersant treatment	16	16	4.64	10.75
Polyp	10	9	4.66	11.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.81
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.48
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.35
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.67
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.72
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.28
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.43
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.43
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.82
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.82
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.75
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.02
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.