Gene detail

Detailed information of OS493_001395-T1 in Lophelia pertusa

Genomic Location: scaffold_3:628127...630632
NR annotation: KAJ7381277.1, hypothetical protein OS493_001395 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9M8T3	Putative gamma-glutamylcyclotransferase At3g02910 OS=Arabidopsis thaliana OX=3702 GN=At3g02910 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008944 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06094 all species →	GGACT	Gamma-glutamyl cyclotransferase, AIG2-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013024 all species →	Domain	Gamma-glutamyl cyclotransferase-like	Interproscan
IPR009288 all species →	Domain	Gamma-glutamylcyclotransferase, AIG2-like domain	Interproscan
IPR039126 all species →	Family	Gamma-glutamylaminecyclotransferase	Interproscan
IPR036568 all species →	Homologous_superfamily	Gamma-glutamyl cyclotransferase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12510 all species →	TROPONIN C-AKIN-1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0061929 all species →	Molecular Function	gamma-glutamylaminecyclotransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19761	GGACT; gamma-glutamylaminecyclotransferase	EC:2.3.2.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001395-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

27.1Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.16	16.05
polyp at pH7 6	18	18	9.45	19.56
coral polyp · control treatment	16	16	8.75	16.14
coral polyp · oil and dispersant treatment	16	16	7.62	27.05
coral polyp · oil treatment	16	16	8.88	12.19
coral polyp · dispersant treatment	16	16	4.99	9.81
Polyp	10	9	9.75	15.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.97
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.56
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.97
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.41
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.20
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.49
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.07
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.05
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.78
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.12
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.62
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.22
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.19
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.60
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.54
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.09
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.88
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.52
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.35
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.