Gene detail

Detailed information of OS493_001401-T1 in Lophelia pertusa

Genomic Location: scaffold_3:693584...698597
NR annotation: KAJ7381283.1, hypothetical protein OS493_001401 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R1N0	Zinc finger protein 830 OS=Mus musculus OX=10090 GN=Znf830 PE=1 SV=1
Q3MHS2	Zinc finger protein 830 OS=Rattus norvegicus OX=10116 GN=Znf830 PE=1 SV=1
Q96NB3	Zinc finger protein 830 OS=Homo sapiens OX=9606 GN=ZNF830 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007139 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_001401-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040050 all species →	Family	Zinc finger protein 830-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13278 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0033260 all species →	Biological Process	nuclear DNA replication	Interproscan
GO:0033314 all species →	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan
GO:0044773 all species →	Biological Process	mitotic DNA damage checkpoint signaling	Interproscan
GO:0048478 all species →	Biological Process	obsolete replication fork protection	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001401-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001401-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

46.6Max TPM

15.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.29	22.37
polyp at pH7 6	18	18	16.32	25.81
coral polyp · control treatment	16	16	18.41	38.41
coral polyp · oil and dispersant treatment	16	16	13.64	46.60
coral polyp · oil treatment	16	16	16.60	22.04
coral polyp · dispersant treatment	16	16	9.98	21.97
Polyp	10	10	12.89	22.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.37
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.51
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.40
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.27
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.09
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.10
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.80
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.51
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.73
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.26
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.80
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.72
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.25
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.03
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.60
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.66
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.46
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.58
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.25
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.93
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.11
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.01
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.85

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.