Gene detail

Detailed information of OS493_001426-T1 in Lophelia pertusa

Genomic Location: scaffold_3:1244220...1269190
NR annotation: KAJ7381305.1, hypothetical protein OS493_001426 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AG06	Meiosis-specific coiled-coil domain-containing protein MEIOC OS=Mus musculus OX=10090 GN=Meioc PE=1 SV=1
A2RUB1	Meiosis-specific coiled-coil domain-containing protein MEIOC OS=Homo sapiens OX=9606 GN=MEIOC PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007188 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15189 all species →	MEIOC	Meiosis-specific coiled-coil domain-containing protein MEIOC	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027963 all species →	Family	Meiosis-specific coiled-coil domain-containing protein MEIOC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33861 all species →	PROTEIN CBG18333	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007141 all species →	Biological Process	male meiosis I	Interproscan
GO:0007144 all species →	Biological Process	female meiosis I	Interproscan
GO:0048255 all species →	Biological Process	mRNA stabilization	Interproscan
GO:0051321 all species →	Biological Process	meiotic cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001426-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001426-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

83.3Max TPM

38.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	36.51	56.28
polyp at pH7 6	18	18	35.50	46.54
coral polyp · control treatment	16	16	47.06	83.30
coral polyp · oil and dispersant treatment	16	16	46.90	75.70
coral polyp · oil treatment	16	16	39.85	57.19
coral polyp · dispersant treatment	16	16	33.17	53.89
Polyp	10	10	23.04	38.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.02
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.14
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.86
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.52
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.38
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.73
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.57
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.50
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.59
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.44
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.99
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.85
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.71
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.39
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.38
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.78
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.45
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.64
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	38.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	37.47
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.89

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.