Gene detail

Detailed information of OS493_001439-T1 in Lophelia pertusa

Genomic Location: scaffold_3:1601869...1608295
NR annotation: KAJ7381317.1, Thymus-specific serine protease [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QXE5	Thymus-specific serine protease OS=Mus musculus OX=10090 GN=Prss16 PE=2 SV=1
Q9NQE7	Thymus-specific serine protease OS=Homo sapiens OX=9606 GN=PRSS16 PE=1 SV=2
Q1PF50	Probable serine protease EDA2 OS=Arabidopsis thaliana OX=3702 GN=EDA2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001918 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05577 all species →	Peptidase_S28	Serine carboxypeptidase S28	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042269 all species →	Homologous_superfamily	Serine carboxypeptidase S28, SKS domain	Interproscan
IPR008758 all species →	Family	Peptidase S28	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11010 all species →	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070008 all species →	Molecular Function	serine-type exopeptidase activity	Interproscan
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001439-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001439-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

36.0Max TPM

13.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	11.96	22.95
polyp at pH7 6	18	17	14.56	35.99
coral polyp · control treatment	16	16	14.96	23.15
coral polyp · oil and dispersant treatment	16	16	9.96	15.54
coral polyp · oil treatment	16	16	17.18	28.09
coral polyp · dispersant treatment	16	16	11.95	26.94
Polyp	10	9	9.72	16.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.62
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.43
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.71
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.37
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.71
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.82
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.37
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.50
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.27
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.32
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.29
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.22
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.09
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.05
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.93
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.67
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.14
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.82
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.81
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.37
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.