Gene detail

Detailed information of OS493_001440-T1 in Lophelia pertusa

Genomic Location: scaffold_3:1615385...1631936
NR annotation: KAJ7381318.1, hypothetical protein OS493_001440 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P90893	Putative serine protease F56F10.1 OS=Caenorhabditis elegans OX=6239 GN=F56F10.1 PE=1 SV=2
P34528	Putative serine protease K12H4.7 OS=Caenorhabditis elegans OX=6239 GN=K12H4.7 PE=3 SV=2
Q9NQE7	Thymus-specific serine protease OS=Homo sapiens OX=9606 GN=PRSS16 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001918 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05577 all species →	Peptidase_S28	Serine carboxypeptidase S28	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR008758 all species →	Family	Peptidase S28	Interproscan
IPR042269 all species →	Homologous_superfamily	Serine carboxypeptidase S28, SKS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11010 all species →	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070008 all species →	Molecular Function	serine-type exopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001440-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001440-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

23.7Max TPM

8.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.13	16.02
polyp at pH7 6	18	18	11.12	23.65
coral polyp · control treatment	16	16	9.35	16.98
coral polyp · oil and dispersant treatment	16	16	5.98	12.46
coral polyp · oil treatment	16	16	8.44	16.75
coral polyp · dispersant treatment	16	16	8.72	19.83
Polyp	10	8	3.48	6.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.08
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.92
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.92
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.87
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.51
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.08
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.52
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.90
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.43
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.98
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.86
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.69
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.16
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.38
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.82
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.63
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.04
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.17
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.71
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.48
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.06
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.44
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.73
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.38
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.