Gene detail

Detailed information of OS493_001458-T1 in Lophelia pertusa

Genomic Location: scaffold_3:1908285...1910380
NR annotation: KAJ7381333.1, hypothetical protein OS493_001458 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0CJ14	Venom protein 302 OS=Lychas mucronatus OX=172552 PE=2 SV=1
Q61581	Insulin-like growth factor-binding protein 7 OS=Mus musculus OX=10090 GN=Igfbp7 PE=1 SV=3
Q16270	Insulin-like growth factor-binding protein 7 OS=Homo sapiens OX=9606 GN=IGFBP7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000733 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00219 all species →	IGFBP	Insulin-like growth factor binding protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011390 all species →	Family	Insulin-like growth factor binding protein-related protein (IGFBP-rP), MAC25	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000867 all species →	Domain	Insulin-like growth factor-binding protein, IGFBP	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14186 all species →	INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001558 all species →	Biological Process	regulation of cell growth	Interproscan
GO:0005520 all species →	Molecular Function	insulin-like growth factor binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001458-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001458-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

28.7Max TPM

8.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.30	9.63
polyp at pH7 6	18	16	5.63	11.30
coral polyp · control treatment	16	16	11.49	27.82
coral polyp · oil and dispersant treatment	16	16	11.89	28.72
coral polyp · oil treatment	16	16	9.61	23.42
coral polyp · dispersant treatment	16	16	12.37	27.65
Polyp	10	8	1.85	3.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.60
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.15
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.45
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.74
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.82
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.58
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.14
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.02
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.25
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.54
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.43
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.42
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.46
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.83
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.