Gene detail

Detailed information of OS493_001468-T1 in Lophelia pertusa

Genomic Location: scaffold_3:2109079...2118901
NR annotation: KAJ7381343.1, conserved oligomeric Golgi complex component [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2TBH9	Conserved oligomeric Golgi complex subunit 8 OS=Bos taurus OX=9913 GN=COG8 PE=2 SV=1
Q96MW5	Conserved oligomeric Golgi complex subunit 8 OS=Homo sapiens OX=9606 GN=COG8 PE=1 SV=2
Q9JJA2	Conserved oligomeric Golgi complex subunit 8 OS=Mus musculus OX=10090 GN=Cog8 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006196 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04124 all species →	Dor1	Dor1-like family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016632 all species →	Family	Conserved oligomeric Golgi complex subunit 8, Metazoal and Viridiplantae	Interproscan
IPR007255 all species →	Family	Conserved oligomeric Golgi complex subunit 8	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21311 all species →	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20295	COG8; conserved oligomeric Golgi complex subunit 8	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001468-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

36.4Max TPM

16.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.34	17.14
polyp at pH7 6	18	18	13.49	18.32
coral polyp · control treatment	16	16	19.62	33.36
coral polyp · oil and dispersant treatment	16	16	26.24	36.42
coral polyp · oil treatment	16	16	19.52	31.05
coral polyp · dispersant treatment	16	16	13.10	25.70
Polyp	10	10	12.73	25.23

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.07
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.79
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.28
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.55
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.09
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.18
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.61
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.77
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.71
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.49
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.96
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.31
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.11
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.98
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.95
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.93
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.82
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.93
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.31
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.62
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.87
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.39
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.61
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.71
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.23
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	24.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.56
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.20
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.