Gene detail

Detailed information of OS493_001471-T1 in Lophelia pertusa

Genomic Location: scaffold_3:2132970...2140446
NR annotation: KAJ7381346.1, Unconventional myosin-VIIa [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13402	Unconventional myosin-VIIa OS=Homo sapiens OX=9606 GN=MYO7A PE=1 SV=2
P97479	Unconventional myosin-VIIa OS=Mus musculus OX=10090 GN=Myo7a PE=1 SV=2
Q17LW0	Myosin-VIIa OS=Aedes aegypti OX=7159 GN=ck PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000878 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00784 all species →	MyTH4	MyTH4 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000857 all species →	Domain	MyTH4 domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR051567 all species →	Family	Unconventional Myosin ATPase	Interproscan
IPR038185 all species →	Homologous_superfamily	MyTH4 domain superfamily	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22692 all species →	MYOSIN VII, XV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001471-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001471-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

88TPM > 0

7Conditions

15.6Max TPM

2.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	2.14	5.36
polyp at pH7 6	18	12	2.04	5.01
coral polyp · control treatment	16	15	2.63	7.21
coral polyp · oil and dispersant treatment	16	11	0.89	5.17
coral polyp · oil treatment	16	14	1.43	7.84
coral polyp · dispersant treatment	16	14	3.27	15.57
Polyp	10	8	2.61	7.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.58
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.82
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.59
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.36
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.24
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.14
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.33
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.40
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.