Gene detail

Detailed information of OS493_001499-T1 in Lophelia pertusa

Genomic Location: scaffold_3:2954027...2968830
NR annotation: KAJ7381367.1, Unconventional myosin-VIIa [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97479	Unconventional myosin-VIIa OS=Mus musculus OX=10090 GN=Myo7a PE=1 SV=2
Q13402	Unconventional myosin-VIIa OS=Homo sapiens OX=9606 GN=MYO7A PE=1 SV=2
Q17LW0	Myosin-VIIa OS=Aedes aegypti OX=7159 GN=ck PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000878 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00784 all species →	MyTH4	MyTH4 domain	Family	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051567 all species →	Family	Unconventional Myosin ATPase	Interproscan
IPR000857 all species →	Domain	MyTH4 domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR038185 all species →	Homologous_superfamily	MyTH4 domain superfamily	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR041794 all species →	Domain	Myosin VII, FERM domain C-lobe, repeat 2	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22692 all species →	MYOSIN VII, XV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001499-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001499-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

46.1Max TPM

17.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.86	20.38
polyp at pH7 6	18	18	13.13	17.98
coral polyp · control treatment	16	16	21.85	40.56
coral polyp · oil and dispersant treatment	16	16	20.13	36.98
coral polyp · oil treatment	16	16	23.25	46.11
coral polyp · dispersant treatment	16	16	15.66	45.89
Polyp	10	9	8.86	17.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.57
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.41
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.10
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.87
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.19
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.32
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.06
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.24
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.70
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.45
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.50
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.17
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.55
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.76
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.66
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.62
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.58
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.11
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.92
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.82
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.23
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.75
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.65
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.53
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.44
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.06
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.89
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.70
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.43
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.65
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.32
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.99
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.97
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.36
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.