Gene detail

Detailed information of OS493_001534-T1 in Lophelia pertusa

Genomic Location: scaffold_3:4098754...4107410
NR annotation: KAJ7381400.1, mitochondrial membrane protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P84817	Mitochondrial fission 1 protein OS=Rattus norvegicus OX=10116 GN=Fis1 PE=1 SV=1
Q9Y3D6	Mitochondrial fission 1 protein OS=Homo sapiens OX=9606 GN=FIS1 PE=1 SV=2
Q9CQ92	Mitochondrial fission 1 protein OS=Mus musculus OX=10090 GN=Fis1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006195 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14853 all species →	Fis1_TPR_C	Fis1 C-terminal tetratricopeptide repeat	Repeat	Interproscan
PF14852 all species →	Fis1_TPR_N	Fis1 N-terminal tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016543 all species →	Family	Mitochondria fission 1 protein	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR028061 all species →	Repeat	Fis1, C-terminal tetratricopeptide repeat	Interproscan
IPR033745 all species →	Domain	Mitochondria fission protein Fis1, cytosolic domain	Interproscan
IPR028058 all species →	Repeat	Fis1, N-terminal tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13247 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000266 all species →	Biological Process	mitochondrial fission	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005779 all species →	Cellular Component	obsolete integral component of peroxisomal membrane	Interproscan
GO:0016559 all species →	Biological Process	peroxisome fission	Interproscan
GO:0031307 all species →	Cellular Component	obsolete integral component of mitochondrial outer membrane	Interproscan
GO:0043653 all species →	Biological Process	mitochondrial fragmentation involved in apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001534-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001534-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

93.1Max TPM

44.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	42.04	93.08
polyp at pH7 6	18	18	45.73	74.39
coral polyp · control treatment	16	16	53.45	78.14
coral polyp · oil and dispersant treatment	16	16	46.88	69.36
coral polyp · oil treatment	16	16	49.47	81.41
coral polyp · dispersant treatment	16	16	30.98	48.40
Polyp	10	10	44.26	69.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	93.08
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.06
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.54
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.70
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.22
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.37
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.62
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.43
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.82
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.93
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.29
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.36
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.06
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.37
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.92
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.23
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.95
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.03
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.61
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.61
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.75
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.29
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.26
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	69.71
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	64.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	54.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	45.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	41.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	38.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	37.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	32.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	30.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	28.30

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.