Gene detail

Detailed information of OS493_001536-T1 in Lophelia pertusa

Genomic Location: scaffold_3:4120574...4150959
NR annotation: KAJ7381402.1, Importin subunit alpha-3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35343	Importin subunit alpha-3 OS=Mus musculus OX=10090 GN=Kpna4 PE=1 SV=1
O35344	Importin subunit alpha-4 OS=Mus musculus OX=10090 GN=Kpna3 PE=1 SV=1
O00629	Importin subunit alpha-3 OS=Homo sapiens OX=9606 GN=KPNA4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001150 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01749 all species →	IBB	Importin beta binding domain	Repeat	Interproscan
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF16186 all species →	Arm_3	Atypical Arm repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002652 all species →	Domain	Importin-alpha, importin-beta-binding domain	Interproscan
IPR024931 all species →	Family	Importin subunit alpha	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036975 all species →	Homologous_superfamily	Importin-alpha, importin-beta-binding domain superfamily	Interproscan
IPR032413 all species →	Repeat	Atypical Arm repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23316 all species →	IMPORTIN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006607 all species →	Biological Process	NLS-bearing protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001536-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001536-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

67.2Max TPM

22.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.05	25.78
polyp at pH7 6	18	18	19.41	24.46
coral polyp · control treatment	16	16	28.09	67.23
coral polyp · oil and dispersant treatment	16	16	27.22	54.05
coral polyp · oil treatment	16	16	25.77	35.61
coral polyp · dispersant treatment	16	16	20.14	38.96
Polyp	10	10	21.32	41.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.55
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.51
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.82
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.38
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.51
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.01
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.82
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.58
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.44
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.95
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.05
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.15
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.77
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.93
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.22
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.92
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.03
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.79
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.93
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.05
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.76
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.61
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.81
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.64
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.12
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.26
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	27.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	24.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	16.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.21
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.01

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.