Gene detail

Detailed information of OS493_001548-T1 in Lophelia pertusa

Genomic Location: scaffold_3:4364084...4413000
NR annotation: KAJ7381413.1, putative ubiquitin carboxyl-terminal hydrolase FAF-X [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_001548-T1

ATGGCAGTAATCTTAGTGTTTCCACTCTTAGCAGCACTGCTCAGACCCTTTGGATCCTGTGCAGAGGTTCTTACAACTGGCACTGTAGAAAAATACTTTTTACCTGTTATAGATTTTGTACCTACATTTCTTGAGAACTTAACTGATGATGAACTTAAAAAAGAGGCCAAAAATGAAGCTAAGAATGATGCTCTCTCATCAATTATCAAGGCTCTTAAAAACCTGGCATTAAGACTAACATCTCGAGAAGACATTGCCAAACAACTGGAAACATTTAAGCTTAAAATGATTCTCAGATTACTTCAAATTTCTTCATTTAATGGAAAGATGAATGCATTAAATGAGATAAACAAAGTTATCACTGGTGTATCATACTTCACTCACCGACACACTGTAACAGAAGAAGAAGAGTGGTTGACAGCTGAGAGAATGGCTGAGTGGATCCAGAAAAATGGTGTCCTTTCTATTGTGTTAAAAGATAATCTTCATCAACCTCAGTATGTTGAAAAACTAGAAAAGATTTTGCGGTTTGTTATAAAGGAGAAAGCTTTGTCCTTAGAGGATTTGGACAACATTTGGGCTGCTCAGGCTGGAAAGCATGATGCAATCGTAAAGAATATCCATGATCTCTTGGCCAAATTAGCCTGGGACTTTTCTGCTGATCAACTTGATCATCTCTTCTCTTGCTTTCAGGAGAGTTGGACAAATGCAAGTAAAAAACAGAGAGAAAAACTGTTGGAGTTAATAAGACGTCTAGCAGAAGATGACAAAGAAGGTATCATGGCACATAAGGTGTTGGGCTTGCTGTGGAACCTTGCTCACAGTGAAGATGTCCCAACAGATATCATGGACTTGGCTCTTAGTGCACACATCAAGATTCTGGATTACAGTTGCTCACAGGACCGTGACTCTCAAAAAACAGAGTGGATTGATCGTTGTATAGATGAGCTCCGTAGTGATACCTGGGTTTTACCAGCACTCAAACAAATCAAAGAAATCTGCTCTCTTTTTTATGAGGCTCCTCAAAACTACTCACATACTCAACGCAACCCCCATGTGTATTATCGACATGAAGTTATAAATCAGCTGCAGCAGACTCACTCCCTGGTCACAATAGTAGCTGATAATTTGGCAAGCTACATGCAAAAAGTATATACCCTGCTTGAAGGTAAACCTGATTTAGACCCAAGTGAACTACAAACAGATGGAAGATATAATCACGCATTTCAAGTACAGGAAAGACTTAACTTTCTGAGATTTCTTCTCAAAGATGGACAGTTGTGGCTGTGTGAACCCCAGGCCAAACTGATCTGGCAGTGTCTTGCAGAAAAAGCTGTTTTACCATCAGACAGAGAGTGTTGCTTCAAGTGGTTTTCAAAGTTAATGGGTGATGAACCGGACCTAGACCCTGAAATCAGCAGATCATTCTTTGAAGGCAATGTGCTCCAGTTAGATCCTTCTCTGTTAACAGAAAATGGCATAAGGTGTTTTGAAAGGTTCTTCAGAGGAGTCAACATCAAAGAGGGTAAACTAGTAGCCAAGCGAAGAGCGTACTTAATGGAAGACTTGGATTTAATTGGAGTGGATTACTTGTGGCAGGTTGTACTTCAAGGCTCAGATGATATTGCTAGCAGAGCAATTGAACTTCTCAAGGAGACATTCACCTCTCTAGGGCCTAAACTAAGGGCAACTCAGGTTGACATCCATGATAAGTTTATCCTGAATTGTACCAATCAGATTCGCCAGTCTGCCGACTTATTCTTTAATAAGAGTACAGAGAATACACCAATTGAGGAGAAGTCTGCAATTCCACGAGAAGAGCTCCAGCAGGAAGCTAAGAAAACAGTGCGCTGTTTGACAGTGCTCAAAGAGTATGTAGGCGAGTGTGACGATGAGCATGCAGAAGAAAGAGCAATTCTACCACATGGAAGGTCCTGTCGTGGCCGACATGTGTCACTGATTGTCAGATTCCCATCCCATGGTCGCCAGGGAGATGACTTTGAAATTTGGTCGCATACAAATGAGTCAATAGCATCTGTAAGAAGACAGATCATGAACAGAGTGAAGGGCTCAATACAGGCAGCCAGGCTTGATCTGTATGTTAATGGTGAAATCCTATGTCCTTCTGATGACAAGAGGCTTATATCACAAGTGCCACTGAGAGACAGGACATTAATAACAGCCAAGATTGGAACACTAAACAGTTCCATGCCATCTTCACCGGACTCGTCATCAGACTCATCAGGGGGGTCCACACCAGCTGCTTCAGATGGACCAAACTTAGAAGCTGAGAACTGCCTTCCAGGAGTGATGTTGTCCAAACGGCACAGCTTTATGCAGTACCTGATAGATCTTGCTGATCACGGTATTGCTCATAACATTCCTGATTTAAGAGAAAGAATTCAGCAACTTCTTAACCTCATTCCATCGGACACAGAGACAGTAGGGAATATCAAGAATGTTTGTAAGACTTCTTCAGAAAACAGCTCAAAAGCATCATCTCCTTTATTGGATGCCATGTTCTTCACACCTTCTTCAACTCAAGTTCTTTATAACCTAGAGATTGTTTATTCCCTTCTTATGCCTGCTGCATTACCAAATCAAGATCACCAAACTTTAGAATTTCAGGTGCACTTTTTAAAATGTGGTGGTATTCAGTGTGCTCTGAACATGCTGACAAGAACAGATTTCCTTCAACATGCTGATGTGATCACCAAAAGAGCGGCATTCCACACACTGCTTAAGATGTCCAAGTTGTTGCTGACTGTAGTGGGATATGCACAGGTGACAGTTGTCGCAGAAGCCATTCAACCTTCAGACCCATCTTGTTCACCACCTCCGGTCTCAGCTAGTGCCCACAATGCTGCAGTGATTCTACAGCAAGCTTTACAGTACATTCCTAACCCTGGCACAGAGTGTATGTTAAGGAACATGGCTGTCAGACTTGCTGGTCACTTGAGTAGCTTGGTTTCAAGTCCTTTGCCAGATTTGAATGCCATCAAGTCTGTGCAGCGGTTATCATGGGCTGCAGGTGTGGGTATGTTACACCTCATGCAGTCAACAAATGAAGAGATACACAAAGTGTATGAAAAGCCCAATGTGAAAGGCCTTGAAAGTGATGACATACTAGTTGCAAGAGAAGCACTTGAAGTACTGAGTGTATGTCTAGCCCTTTGTCCAAGTGCCTTAGAAACGCTCACCAAAGACAAGTCCTGGCAGTGTTTCATCATCGACCTCCTTATATTGTGCCAAAGCAGGGCCATTCGATTCAGCACAGCAGAACAGTTCTTCCTCATAGCTACAAGATGTTCCCATGGTCACAGGCCACTTATCTTTTTCATTACACTTCTTTTTACTGTGCTTGTGAACTCCATTAAGGATCATGCAGGTTCCTCGTATGAGTACTTCAACTTGTTTTGCAAATTACTTGCTCATGCCTTCATGACGCACTGTCCCTTGCCCACAGCAGAAATGATGCTAAACACTGAAATAGCGTGGCTCAAAAAGACAAAGGATCGTGTTCTATCATTTGACGAGGGAAGCTCACCTGTGGATGAAGCCCTGTTGGAGGGTCATTTAGGAGTTACTAGAGAACTACTGCTGTTCCAGACTGCACAGAAAAAGCTTGCTATTGGCTCACAGAAGGATGGATCTAATCTTATCAAGGATCTTGTGGAAGATTTCATCTTTCCTGCATCCAAACTAATAGTGGAAGCCAGGAATGGAAGTGATGAAGTATGGAACAAACGAGTGACAGCAATCTGTTCTACCCCACCCACCCTGGTAGCTGCTTTTGATCTTCTAGTTGCTCTTTGTCGAGGCTGTGTTGAAAACCTTAAAGTCTTGGCAGATATCCTCGCTGATTTCTACTACTCTGGCGAAGATCCTCCTTTGACAGAGTGGGAGCATTTACCCCCAATTGGGCCACGCCCATACAAAGGGTACGTGGGTCTCAAGAATGCTGGGGCCACATGTTACATGAATTCAGTAATTCAACAGCTATTTATGATACCTGAATTACGCGAGGGTGTGCTTAAGGTCGAGGGAGCAGCAGTAAATGAAGAAGAGGGTGGTATTGATGTAGAGGAGAAGTCTGAGAGTGAGAACACCATAGATACAGGATATCAATCTGAAGACAACAGAGAAAATGACAAGGAGACTGAAACCAAAGACAAAGAACAGGAAGTGAAGAAGTATCAAGTTAGTGTGCTCAATCAGATCCAGTTCATCTTTGGACACTTGGCACAGAGTCAGCTACAGTTCCATGTACCTCAGGGATTCTGGAAAACATTCAAGCTATGGGGTGAACCTATCAATTTACGAGAACAGCATGATGCCCTGGAGTTTTTCAACAACTTGGTTGATAACTTAGATGAAGGGTTGAAGACGTTAAGTGGTGATCCATTGTTTTCTAACATACTGGGCGGCAGCTTTGCTGATCAGAAGATTTGTAAAGGATGTCCACACAGGTATTCTCGCGAGGCGCCATTCATTGCTTTGAATGTGGACATTCGTAATCATCAGAGTTTGTTGGACTCCATGGAACAATTTGTCAAAGGTGACTTACTTGAAGGAGCCAATGCATACCACTGTGAGAAGTGTGACAAAAAGGTTGACACAGTCAAGAGGATGTGCATCAAGAACCTTCCACGTGTGTTAGCAATTCAACTGAAGCGGTTTGACTATGACTGGGAAAGAGAGTGCGCTGTTAAATTCAATGATTACTTTGAATTTCCCCGTGACATTGACATGGAGCCATTTACAGAACTTGGACTTGCAAAACTTCAAGGTGAAATCATGGAGAACTCAACTGAATGTGAATCAGAGGAGTCAGAGCAGAAGAGTGAAGGAGTGAGCAGTACAAAGTACCGACTGGTGGGAATCTTAGTACACAGTGGACAAGCTAGCGGTGGACATTATTACTCTTATGTCCTACAGAGAATGTCACCAGATATTTCACCCAAATGGTACAAATTTGATGATGGCGAGGTCTCAGAATGCAAAATGGATGATGATGAGGAGTTGAAGACGCAGTGTTTTGGAGGAGAGTACATGGGAGAAGTGTTTGATCACATGCTTAAAAGGATGTCCTATAGAAGGCAAAAGAGATGGTGGAATGCCTACATCTTGTTTTATGAACGCCTTGATGTTATGGATTCAAACAGAACAATCGATGTCGACAGAAATTGTCAGATGCCAGCAGTAATCAAGAGAGCAGTACGGAAACAAAACGTACACTTCCTTCACAATCGAATACAGTACAGTGTGGAATTCTTTCAGTTTATGAGGAAGCTGGTTACCGCTAATGCTGCATTAGAAAACACGTCGGAAGCGGAGCAGCAGTGCTGCATGGTCAGCATTAAGTTGGTTTCCAAGTTCCTTTTTACCACTGGCTTCCGCACCAAGAAAACTGTCAGGGGTCCTGCAGGTGAATGGTATGATGCTGTATGTGTGTTACTCAGACAGAGTAAAGACGTCAGGGAGTGGTTCGCCAAGTTTGTATTATTCTCCTTCCCAGATCGGTTTTCAGAGTACTTACTTGAGTGTCCCAGTGGAGAGGTACGAAGTGCGTTTGCCAAAATCCTTGTGTTTTTAGCGCACTTCTCTCGCCAGGACGGTCCATGCTGTCCATACCCAGAAGACAGTAAACAAGAAACAGAGCTTGACAACAAAGCCACACTGAGTGACCATATCCTAAATGCTGTACTGGGATTATTGAAGAAAGAAGTTCCTGAACATGGCCGTCATTTACAGCAGTATTTTCACTTCTTTCTCATGTACTCGACTATTGGTCCACCTGAGAGACTGCAGCTGCTTCAGCTTGGAGTTCCCGCCACTTTCATGCTTGTGGCATTGGATGAAGGCCCAGGCCCTCCAATTCGTTACCAGTACGCTGAACTTGGCAAACTTTACTCGGTTGTGTCTCAGTTGGTTCGCTGTTGTGACGTGTCAGCCAGAATGCGTTCCTCTAACCCTAGTACTCAGCCGAAAGCGAACCCATTTGGTGAGGGACCTCCTGTCATGGAGATTCAGTCGGTTGTAGCGGATATCCTCTTCAATAAAGCCACGTATTTAAAGAAAGTCATTGAAGACAGCACTGCTTCAGAAGAGACACTGAAGCTGTTAAGATTTTGTTGTTGGGAAAACCCACGTTTTTCACGGATTGTGCTGAGTGAACTCCTTTGGCAGGTGGCATTTTCGTACACGTATGAGATGCGGCCATATTTGGACTTGTTACTGCAGATGTTGCTTATTACAGATTCCTGGCAGAATCACAGAATTCATAACACTCTTAAAGGTATTCCTGATGACAAGGAAGGTTTATTTGACACAATCCAGCGGTCAAAAAATCATTACCAGAAGAGAGCGTATCAGTGCATCAAGTTTATGGTGACACTCTTCTGCAGCTGTCCCCTTGCACACCAGATCTTTATGGCAGCACAGGACCTCCGCCGGAAATGGACGTGGGCAGTGGAGTGGCTTAATGACGAGCTTGACAGGAGACCCTACACAGGTGGCACGTCTTACACATACAACAACTGGTCACCGCCAGCACAGTCCAATGAGACTTCAAATGGGTATTTCCTTGAGCGCTCACACAGTGCACGGCTGACACTTGCCAAGGCCTGCGAATTGTGTCCAGAAGAGGACCAAGAAGAGCCCGAGGGGGATGTGGAAGTAGAAAATGGGAACTCTGCAGATGAGGCTTCTTCCCTAAATGCCCAGCGTTCCAGCCCCAGTGGGGAGTCTCATGACCAGTCTCCCCCAGTCACAGATCAGATCCCACCCCTGGATAACAGTGATACTGTAGAAAATGAAACAACTAAACTACTTAATGAAGAGTCTGACTGA

Transcript

OS493_001548-T1

Protein

OS493_001548-T1

MAVILVFPLLAALLRPFGSCAEVLTTGTVEKYFLPVIDFVPTFLENLTDDELKKEAKNEAKNDALSSIIKALKNLALRLTSREDIAKQLETFKLKMILRLLQISSFNGKMNALNEINKVITGVSYFTHRHTVTEEEEWLTAERMAEWIQKNGVLSIVLKDNLHQPQYVEKLEKILRFVIKEKALSLEDLDNIWAAQAGKHDAIVKNIHDLLAKLAWDFSADQLDHLFSCFQESWTNASKKQREKLLELIRRLAEDDKEGIMAHKVLGLLWNLAHSEDVPTDIMDLALSAHIKILDYSCSQDRDSQKTEWIDRCIDELRSDTWVLPALKQIKEICSLFYEAPQNYSHTQRNPHVYYRHEVINQLQQTHSLVTIVADNLASYMQKVYTLLEGKPDLDPSELQTDGRYNHAFQVQERLNFLRFLLKDGQLWLCEPQAKLIWQCLAEKAVLPSDRECCFKWFSKLMGDEPDLDPEISRSFFEGNVLQLDPSLLTENGIRCFERFFRGVNIKEGKLVAKRRAYLMEDLDLIGVDYLWQVVLQGSDDIASRAIELLKETFTSLGPKLRATQVDIHDKFILNCTNQIRQSADLFFNKSTENTPIEEKSAIPREELQQEAKKTVRCLTVLKEYVGECDDEHAEERAILPHGRSCRGRHVSLIVRFPSHGRQGDDFEIWSHTNESIASVRRQIMNRVKGSIQAARLDLYVNGEILCPSDDKRLISQVPLRDRTLITAKIGTLNSSMPSSPDSSSDSSGGSTPAASDGPNLEAENCLPGVMLSKRHSFMQYLIDLADHGIAHNIPDLRERIQQLLNLIPSDTETVGNIKNVCKTSSENSSKASSPLLDAMFFTPSSTQVLYNLEIVYSLLMPAALPNQDHQTLEFQVHFLKCGGIQCALNMLTRTDFLQHADVITKRAAFHTLLKMSKLLLTVVGYAQVTVVAEAIQPSDPSCSPPPVSASAHNAAVILQQALQYIPNPGTECMLRNMAVRLAGHLSSLVSSPLPDLNAIKSVQRLSWAAGVGMLHLMQSTNEEIHKVYEKPNVKGLESDDILVAREALEVLSVCLALCPSALETLTKDKSWQCFIIDLLILCQSRAIRFSTAEQFFLIATRCSHGHRPLIFFITLLFTVLVNSIKDHAGSSYEYFNLFCKLLAHAFMTHCPLPTAEMMLNTEIAWLKKTKDRVLSFDEGSSPVDEALLEGHLGVTRELLLFQTAQKKLAIGSQKDGSNLIKDLVEDFIFPASKLIVEARNGSDEVWNKRVTAICSTPPTLVAAFDLLVALCRGCVENLKVLADILADFYYSGEDPPLTEWEHLPPIGPRPYKGYVGLKNAGATCYMNSVIQQLFMIPELREGVLKVEGAAVNEEEGGIDVEEKSESENTIDTGYQSEDNRENDKETETKDKEQEVKKYQVSVLNQIQFIFGHLAQSQLQFHVPQGFWKTFKLWGEPINLREQHDALEFFNNLVDNLDEGLKTLSGDPLFSNILGGSFADQKICKGCPHRYSREAPFIALNVDIRNHQSLLDSMEQFVKGDLLEGANAYHCEKCDKKVDTVKRMCIKNLPRVLAIQLKRFDYDWERECAVKFNDYFEFPRDIDMEPFTELGLAKLQGEIMENSTECESEESEQKSEGVSSTKYRLVGILVHSGQASGGHYYSYVLQRMSPDISPKWYKFDDGEVSECKMDDDEELKTQCFGGEYMGEVFDHMLKRMSYRRQKRWWNAYILFYERLDVMDSNRTIDVDRNCQMPAVIKRAVRKQNVHFLHNRIQYSVEFFQFMRKLVTANAALENTSEAEQQCCMVSIKLVSKFLFTTGFRTKKTVRGPAGEWYDAVCVLLRQSKDVREWFAKFVLFSFPDRFSEYLLECPSGEVRSAFAKILVFLAHFSRQDGPCCPYPEDSKQETELDNKATLSDHILNAVLGLLKKEVPEHGRHLQQYFHFFLMYSTIGPPERLQLLQLGVPATFMLVALDEGPGPPIRYQYAELGKLYSVVSQLVRCCDVSARMRSSNPSTQPKANPFGEGPPVMEIQSVVADILFNKATYLKKVIEDSTASEETLKLLRFCCWENPRFSRIVLSELLWQVAFSYTYEMRPYLDLLLQMLLITDSWQNHRIHNTLKGIPDDKEGLFDTIQRSKNHYQKRAYQCIKFMVTLFCSCPLAHQIFMAAQDLRRKWTWAVEWLNDELDRRPYTGGTSYTYNNWSPPAQSNETSNGYFLERSHSARLTLAKACELCPEEDQEEPEGDVEVENGNSADEASSLNAQRSSPSGESHDQSPPVTDQIPPLDNSDTVENETTKLLNEESD

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q93008	Ubiquitin carboxyl-terminal hydrolase 9X OS=Homo sapiens OX=9606 GN=USP9X PE=1 SV=4
P70398	Ubiquitin carboxyl-terminal hydrolase 9X OS=Mus musculus OX=10090 GN=Usp9x PE=1 SV=2
O00507	Ubiquitin carboxyl-terminal hydrolase 9Y OS=Homo sapiens OX=9606 GN=USP9Y PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003084 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12030 all species →	DUF3517	Domain of unknown function (DUF3517)	Family	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR050164 all species →	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR021905 all species →	Domain	Ubiquitin C-terminal hydrolase-like, DUF3517	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11840	USP9_24; ubiquitin carboxyl-terminal hydrolase 9/24	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001548-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

61.8Max TPM

34.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	30.28	42.93
polyp at pH7 6	18	18	31.74	41.61
coral polyp · control treatment	16	16	40.90	61.78
coral polyp · oil and dispersant treatment	16	16	44.25	61.41
coral polyp · oil treatment	16	16	36.77	45.32
coral polyp · dispersant treatment	16	16	30.06	39.35
Polyp	10	10	26.79	33.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.88
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.08
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.97
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.11
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.48
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.42
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.17
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.38
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.26
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.66
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.78
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.36
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.18
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.34
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.31
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.85
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.60
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.32
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.17
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.69
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.60
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.16
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.41
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.22
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.37
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.60
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.47
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.50
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.97
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.03
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.63
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	33.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	32.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	31.55
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	30.52
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	26.35
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	25.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.67
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	20.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	17.89

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.