Gene detail

Detailed information of OS493_001572-T1 in Lophelia pertusa

Genomic Location: scaffold_3:4644350...4649413
NR annotation: KAJ7381436.1, N-alpha-acetyltransferase 50 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DBY2	N-alpha-acetyltransferase 50 OS=Danio rerio OX=7955 GN=naa50 PE=1 SV=1
Q5XGA9	N-alpha-acetyltransferase 50 OS=Xenopus tropicalis OX=8364 GN=naa50 PE=2 SV=1
Q9NHD5	Probable N-acetyltransferase san OS=Drosophila melanogaster OX=7227 GN=san PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006586 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR051556 all species →	Family	N-terminal and lysine N-acetyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42919 all species →	N-ALPHA-ACETYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0007064 all species →	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0008080 all species →	Molecular Function	N-acetyltransferase activity	Interproscan
GO:0031415 all species →	Cellular Component	NatA complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20793	NAA50, NAT5; N-alpha-acetyltransferase 50	EC:2.3.1.258 EC:2.3.1.309	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001572-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

71.9Max TPM

18.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.62	49.24
polyp at pH7 6	18	17	18.83	36.68
coral polyp · control treatment	16	16	22.14	39.68
coral polyp · oil and dispersant treatment	16	16	15.82	43.65
coral polyp · oil treatment	16	16	21.36	38.27
coral polyp · dispersant treatment	16	16	10.83	24.80
Polyp	10	9	26.80	71.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.45
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.71
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.65
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.86
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.53
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.64
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.18
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.42
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.44
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.31
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.64
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.68
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.03
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.53
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.47
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.75
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.16
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.25
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.65
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.53
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.43
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.48
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.23
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.22
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.67
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.07
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	71.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	39.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.50
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	33.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	26.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	16.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.