Gene detail

Detailed information of OS493_001582-T1 in Lophelia pertusa

Genomic Location: scaffold_3:4820219...4841524
NR annotation: KAJ7381446.1, Anamorsin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7S710	Anamorsin homolog OS=Nematostella vectensis OX=45351 GN=v1g167244 PE=3 SV=1
C3YFB4	Anamorsin homolog OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_58504 PE=3 SV=1
Q4SK88	Anamorsin OS=Tetraodon nigroviridis OX=99883 GN=ciapin1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004920 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05093 all species →	CIAPIN1	Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007785 all species →	Family	Anamorsin	Interproscan
IPR046408 all species →	Domain	Anamorsin, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13273 all species →	ANAMORSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001582-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001582-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

179.9Max TPM

63.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	89.62	155.16
polyp at pH7 6	18	18	88.26	125.49
coral polyp · control treatment	16	16	47.29	75.76
coral polyp · oil and dispersant treatment	16	16	33.53	57.44
coral polyp · oil treatment	16	16	48.72	66.64
coral polyp · dispersant treatment	16	16	41.43	117.65
Polyp	10	10	109.54	179.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	155.16
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	148.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	113.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	112.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	105.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	100.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.76
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	85.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.32
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.30
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.46
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.11
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	125.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	119.51
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	117.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	105.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.40
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.56
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.97
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.39
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.44
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.33
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.52
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.60
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.51
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.92
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	179.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	156.78
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	146.97
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	138.29
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	122.32
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	87.45
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	86.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	69.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	65.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	43.22

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.