Gene detail

Detailed information of OS493_001634-T1 in Lophelia pertusa

Genomic Location: scaffold_3:7043191...7043781
NR annotation: KAJ7381489.1, hypothetical protein OS493_001634 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5M7F8	Ciliary microtubule inner protein 2C OS=Xenopus laevis OX=8355 GN=cimip2ca PE=2 SV=1
Q5M7D8	Ciliary microtubule inner protein 2C OS=Xenopus laevis OX=8355 GN=cimip2cb PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009692 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10629 all species →	DUF2475	Protein of unknown function (DUF2475)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052329 all species →	Family	Ciliary Microtubule Inner Protein 2C	Interproscan
IPR018902 all species →	Domain	Ciliary microtubule inner protein 2A-C-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34924 all species →	UPF0573 PROTEIN C2ORF70	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_001634-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001634-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001634-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

49.6Max TPM

16.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.76	25.25
polyp at pH7 6	18	18	16.62	27.26
coral polyp · control treatment	16	16	20.24	49.63
coral polyp · oil and dispersant treatment	16	16	16.97	26.22
coral polyp · oil treatment	16	16	18.28	28.16
coral polyp · dispersant treatment	16	16	10.70	17.10
Polyp	10	10	16.07	26.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.43
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.71
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.41
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.76
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.46
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.17
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.53
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.62
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.34
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.69
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.43
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.78
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.66
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.48
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.11
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.22
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.71
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.02
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.58
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.16
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.40
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.54
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.51
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.88
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.53
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.18

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.