Gene detail

Detailed information of OS493_001635-T1 in Lophelia pertusa

Genomic Location: scaffold_3:7043900...7046829
NR annotation: KAJ7381490.1, hypothetical protein OS493_001635 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001237 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_001635-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR038261 all species →	Homologous_superfamily	Golgi phosphoprotein 3-like domain superfamily	Interproscan

PANTHER

No PANTHER signature was detected for OS493_001635-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_001635-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001635-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001635-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

70.0Max TPM

16.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.05	15.06
polyp at pH7 6	18	17	8.19	15.01
coral polyp · control treatment	16	16	19.50	37.24
coral polyp · oil and dispersant treatment	16	16	24.60	42.47
coral polyp · oil treatment	16	16	20.61	36.59
coral polyp · dispersant treatment	16	16	12.45	17.68
Polyp	10	10	26.29	69.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.05
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.06
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.70
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.68
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.36
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.55
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.44
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.75
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.93
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.65
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.27
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.30
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.55
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.68
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.47
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.37
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.69
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.81
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.63
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	69.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	57.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	38.90
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	24.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	23.02
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.