Gene detail

Detailed information of OS493_001645-T1 in Lophelia pertusa

Genomic Location: scaffold_3:7413466...7414743
NR annotation: KAJ7381497.1, hypothetical protein OS493_001645 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9SAJ7	Metal tolerance protein 9 OS=Arabidopsis thaliana OX=3702 GN=MTP9 PE=3 SV=2
O80632	Metal tolerance protein 11 OS=Arabidopsis thaliana OX=3702 GN=MTP11 PE=2 SV=1
Q5NA18	Metal tolerance protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=MTP5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007789 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01545 all species →	Cation_efflux	Cation efflux family	Family	Interproscan
PF16916 all species →	ZT_dimer	Dimerisation domain of Zinc Transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002524 all species →	Family	Cation efflux protein	Interproscan
IPR027470 all species →	Domain	Cation efflux protein, cytoplasmic domain	Interproscan
IPR027469 all species →	Homologous_superfamily	Cation efflux transmembrane domain superfamily	Interproscan
IPR036837 all species →	Homologous_superfamily	Cation efflux protein, cytoplasmic domain superfamily	Interproscan
IPR050291 all species →	Family	Cation Diffusion Facilitator Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43840 all species →	MITOCHONDRIAL METAL TRANSPORTER 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0008324 all species →	Molecular Function	monoatomic cation transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001645-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001645-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

8.7Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.75	7.26
polyp at pH7 6	18	18	4.55	8.24
coral polyp · control treatment	16	16	4.43	8.70
coral polyp · oil and dispersant treatment	16	16	2.89	6.08
coral polyp · oil treatment	16	16	4.11	8.72
coral polyp · dispersant treatment	16	16	2.76	5.97
Polyp	10	10	4.98	8.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.14
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.90
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.48
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.71
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.73
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.91
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.34
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.48
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.13
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.45

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.