Gene detail

Detailed information of OS493_001653-T1 in Lophelia pertusa

Genomic Location: scaffold_3:7655512...7661501
NR annotation: KAJ7381505.1, Protein kinase C-like 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20007	Phosphoenolpyruvate carboxykinase [GTP] OS=Drosophila melanogaster OX=7227 GN=Pepck1 PE=2 SV=2
P05153	Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Gallus gallus OX=9031 GN=PCK1 PE=2 SV=1
A0A4X1UM84	Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Sus scrofa OX=9823 GN=PCK1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0018465 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17297 all species →	PEPCK_N	Phosphoenolpyruvate carboxykinase N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008209 all species →	Family	Phosphoenolpyruvate carboxykinase, GTP-utilising	Interproscan
IPR035078 all species →	Domain	Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal	Interproscan
IPR008210 all species →	Homologous_superfamily	Phosphoenolpyruvate carboxykinase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11561 all species →	PHOSPHOENOLPYRUVATE CARBOXYKINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004611 all species →	Molecular Function	phosphoenolpyruvate carboxykinase activity	Interproscan
GO:0004613 all species →	Molecular Function	phosphoenolpyruvate carboxykinase (GTP) activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006094 all species →	Biological Process	gluconeogenesis	Interproscan
GO:0019543 all species →	Biological Process	propionate catabolic process	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0033993 all species →	Biological Process	response to lipid	Interproscan
GO:0042594 all species →	Biological Process	response to starvation	Interproscan
GO:0046327 all species →	Biological Process	glycerol biosynthetic process from pyruvate	Interproscan
GO:0071333 all species →	Biological Process	cellular response to glucose stimulus	Interproscan
GO:0017076 all species →	Molecular Function	purine nucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001653-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001653-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,221.4Max TPM

125.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	30.67	75.39
polyp at pH7 6	18	18	40.65	129.71
coral polyp · control treatment	16	16	156.52	610.14
coral polyp · oil and dispersant treatment	16	16	145.58	394.08
coral polyp · oil treatment	16	16	95.66	409.93
coral polyp · dispersant treatment	16	16	374.73	1,221.38
Polyp	10	10	12.30	35.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.13
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	129.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	122.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.80
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.48
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.66
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.01
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.31
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.43
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.81
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.63
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	610.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	320.46
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	310.53
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	228.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	182.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	165.93
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	163.42
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	151.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.20
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	394.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	381.95
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	328.67
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	273.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	271.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	198.54
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	127.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.54
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	409.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	354.27
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	136.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	133.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.01
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.39
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,221.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,048.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	905.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	683.23
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	595.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	281.29
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	278.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	251.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	205.26
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	135.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.19
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.79
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.30
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.64
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	35.93
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.16
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.19
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.68
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.54
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.69
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.18

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.