Detailed information of OS493_001656-T1 in Lophelia pertusa

Genomic Location: scaffold_3:7687284...7701858
NR annotation: KAJ7381508.1, hypothetical protein OS493_001656 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5RCV3Nibrin OS=Pongo abelii OX=9601 GN=NBN PE=2 SV=2
O60934Nibrin OS=Homo sapiens OX=9606 GN=NBN PE=1 SV=1
Q9JIL9Nibrin OS=Rattus norvegicus OX=10116 GN=Nbn PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004963 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08599
all species →		Nbs1_CDNA damage repair protein Nbs1FamilyInterproscan
PF16508
all species →		NIBRIN_BRCT_IISecond BRCT domain on Nijmegen syndrome breakage proteinDomainInterproscan
PF16770
all species →		RTT107_BRCT_5Regulator of Ty1 transposition protein 107 BRCT domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036420
all species →		Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR040227
all species →		FamilyNibrin-relatedInterproscan
IPR043014
all species →		Homologous_superfamilyNibrin, second BRCT domain superfamilyInterproscan
IPR001357
all species →		DomainBRCT domainInterproscan
IPR013908
all species →		DomainNibrin, C-terminalInterproscan
IPR032429
all species →		DomainNibrin, second BRCT domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12162
all species →		NIBRIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000724
all species →		Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0003684
all species →		Molecular Functiondamaged DNA bindingInterproscan
GO:0006302
all species →		Biological Processdouble-strand break repairInterproscan
GO:0007095
all species →		Biological Processmitotic G2 DNA damage checkpoint signalingInterproscan
GO:0030870
all species →		Cellular ComponentMre11 complexInterproscan
GO:0032508
all species →		Biological ProcessDNA duplex unwindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_001656-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_001656-T1 global co-expression network
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