Gene detail

Detailed information of OS493_001695-T1 in Lophelia pertusa

Genomic Location: scaffold_4:126936...135211
NR annotation: KAJ7374970.1, Regulator of G-protein signaling 20 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O70521	Regulator of G-protein signaling 19 OS=Rattus norvegicus OX=10116 GN=Rgs19 PE=1 SV=1
Q9PWA1	Regulator of G-protein signaling 20 OS=Gallus gallus OX=9031 GN=RGS20 PE=2 SV=1
P49795	Regulator of G-protein signaling 19 OS=Homo sapiens OX=9606 GN=RGS19 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001163 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10845 all species →	REGULATOR OF G PROTEIN SIGNALING	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_001695-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16449	RGS; regulator of G-protein signaling	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001695-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

55.1Max TPM

24.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.46	46.00
polyp at pH7 6	18	18	27.40	48.35
coral polyp · control treatment	16	16	22.38	37.47
coral polyp · oil and dispersant treatment	16	16	25.01	37.80
coral polyp · oil treatment	16	16	31.85	55.05
coral polyp · dispersant treatment	16	16	17.44	33.09
Polyp	10	9	13.34	27.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.06
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.86
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.06
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.21
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.66
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.03
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.47
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.50
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.46
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.77
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.16
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.70
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.57
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.68
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.93
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.99
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.09
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.75
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.94
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.61
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.02
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	27.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	24.84
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.