Gene detail

Detailed information of OS493_001719-T1 in Lophelia pertusa

Genomic Location: scaffold_4:427283...429819
NR annotation: KAJ7374992.1, Transmembrane protein 14C [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQN6	Transmembrane protein 14C OS=Mus musculus OX=10090 GN=Tmem14c PE=1 SV=1
Q9P0S9	Transmembrane protein 14C OS=Homo sapiens OX=9606 GN=TMEM14C PE=1 SV=1
Q924P2	Transmembrane protein 14C OS=Rattus norvegicus OX=10116 GN=Tmem14c PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009445 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03647 all species →	Tmemb_14	Transmembrane proteins 14C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044890 all species →	Homologous_superfamily	TMEM14 superfamily	Interproscan
IPR005349 all species →	Family	TMEM14 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12668 all species →	TRANSMEMBRANE PROTEIN 14, 15	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0031966 all species →	Cellular Component	mitochondrial membrane	Interproscan
GO:0070453 all species →	Biological Process	regulation of heme biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001719-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001719-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

154.0Max TPM

66.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	54.15	101.26
polyp at pH7 6	18	18	49.18	78.55
coral polyp · control treatment	16	16	79.08	124.28
coral polyp · oil and dispersant treatment	16	16	73.39	133.37
coral polyp · oil treatment	16	16	83.67	153.95
coral polyp · dispersant treatment	16	16	61.72	122.99
Polyp	10	10	63.99	108.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.85
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.35
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.03
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.80
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.38
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.99
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.84
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.55
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.46
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.61
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.02
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.93
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.07
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.26
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.98
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.18
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.97
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	153.95
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	137.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.49
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	122.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.10
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.11
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.44
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.20
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.93
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.30
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.83
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.93
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.83
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	108.91
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	100.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	77.44
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	68.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	68.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	67.20
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	40.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	37.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	37.08
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	33.66

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.