Gene detail

Detailed information of OS493_001731-T1 in Lophelia pertusa

Genomic Location: scaffold_4:521494...528562
NR annotation: KAJ7375004.1, hypothetical protein OS493_001731 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P61584	Rho-associated protein kinase 1 (Fragment) OS=Pan troglodytes OX=9598 GN=ROCK1 PE=3 SV=1
Q13464	Rho-associated protein kinase 1 OS=Homo sapiens OX=9606 GN=ROCK1 PE=1 SV=1
P70335	Rho-associated protein kinase 1 OS=Mus musculus OX=10090 GN=Rock1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002895 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08912 all species →	Rho_Binding	Rho Binding	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR015008 all species →	Domain	ROCK, Rho binding domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR050839 all species →	Family	Rho-associated Serine/Threonine Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22988 all species →	MYOTONIC DYSTROPHY S/T KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0018107 all species →	Biological Process	peptidyl-threonine phosphorylation	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0031032 all species →	Biological Process	actomyosin structure organization	Interproscan
GO:0048598 all species →	Biological Process	embryonic morphogenesis	Interproscan
GO:0072518 all species →	Molecular Function	Rho-dependent protein serine/threonine kinase activity	Interproscan
GO:1901888 all species →	Biological Process	regulation of cell junction assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001731-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001731-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

52.7Max TPM

26.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.93	36.92
polyp at pH7 6	18	18	23.58	34.46
coral polyp · control treatment	16	16	31.56	52.71
coral polyp · oil and dispersant treatment	16	16	25.13	36.60
coral polyp · oil treatment	16	16	29.61	44.20
coral polyp · dispersant treatment	16	16	21.70	42.05
Polyp	10	10	24.72	37.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.92
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.51
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.61
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.46
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.81
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.05
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.48
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.98
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.36
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.36
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.18
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.71
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.44
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.52
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.30
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.49
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.05
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.13
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.06
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.25
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.88
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.30
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	37.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	32.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	30.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	29.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	25.65
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	17.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.72

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.