Gene detail

Detailed information of OS493_001754-T1 in Lophelia pertusa

Genomic Location: scaffold_4:739752...740198
NR annotation: KAJ7375025.1, Synaptosomal-associated protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008696 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_001754-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR000727 all species →	Domain	Target SNARE coiled-coil homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19305 all species →	SYNAPTOSOMAL ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0016082 all species →	Biological Process	synaptic vesicle priming	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0031629 all species →	Biological Process	synaptic vesicle fusion to presynaptic active zone membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08509	SNAP29; synaptosomal-associated protein 29	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001754-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

40.6Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.91	8.95
polyp at pH7 6	18	18	3.80	6.03
coral polyp · control treatment	16	16	6.75	12.44
coral polyp · oil and dispersant treatment	16	16	12.14	27.69
coral polyp · oil treatment	16	16	6.85	16.44
coral polyp · dispersant treatment	16	16	13.98	40.58
Polyp	10	10	10.82	21.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.95
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.14
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.61
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.44
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.67
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.45
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.13
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.85
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.55
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.68
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	21.95
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.28
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.82
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.70

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.