Gene detail

Detailed information of OS493_001781-T1 in Lophelia pertusa

Genomic Location: scaffold_4:1072263...1075979
NR annotation: KAJ7375050.1, hypothetical protein OS493_001781 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002137 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21744 all species →	BAHCC1-like_Tudor	BAHCC1-like, Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048924 all species →	Domain	BAHCC1-like, Tudor domain	Interproscan

PANTHER

No PANTHER signature was detected for OS493_001781-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_001781-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001781-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001781-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

25.6Max TPM

7.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.67	17.14
polyp at pH7 6	18	17	4.02	7.14
coral polyp · control treatment	16	16	11.15	19.56
coral polyp · oil and dispersant treatment	16	15	5.24	12.66
coral polyp · oil treatment	16	16	8.94	16.98
coral polyp · dispersant treatment	16	16	4.77	11.70
Polyp	10	10	9.70	25.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.16
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.94
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.07
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.41
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.34
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.45
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.94
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.40
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.97
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.19
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.54
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	25.60
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.23
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.