Gene detail

Detailed information of OS493_001800-T1 in Lophelia pertusa

Genomic Location: scaffold_4:1258033...1260567
NR annotation: KAJ7374992.1, Transmembrane protein 14C [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQN6	Transmembrane protein 14C OS=Mus musculus OX=10090 GN=Tmem14c PE=1 SV=1
Q9P0S9	Transmembrane protein 14C OS=Homo sapiens OX=9606 GN=TMEM14C PE=1 SV=1
Q924P2	Transmembrane protein 14C OS=Rattus norvegicus OX=10116 GN=Tmem14c PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009445 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03647 all species →	Tmemb_14	Transmembrane proteins 14C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044890 all species →	Homologous_superfamily	TMEM14 superfamily	Interproscan
IPR005349 all species →	Family	TMEM14 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12668 all species →	TRANSMEMBRANE PROTEIN 14, 15	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0031966 all species →	Cellular Component	mitochondrial membrane	Interproscan
GO:0070453 all species →	Biological Process	regulation of heme biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001800-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001800-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

115.3Max TPM

52.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	62.81	115.31
polyp at pH7 6	18	18	65.96	87.79
coral polyp · control treatment	16	16	54.65	86.36
coral polyp · oil and dispersant treatment	16	16	40.39	85.15
coral polyp · oil treatment	16	15	54.80	107.55
coral polyp · dispersant treatment	16	15	38.80	84.53
Polyp	10	10	46.36	92.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.74
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.60
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.72
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.10
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.02
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.18
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.15
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.87
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.51
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.03
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.23
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.22
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	92.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	88.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	49.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	47.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	46.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	33.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	32.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	31.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	30.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.64

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.