Gene detail

Detailed information of OS493_001805-T1 in Lophelia pertusa

Genomic Location: scaffold_4:1319746...1328947
NR annotation: KAJ7375073.1, Mitogen-activated protein kinase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P63085	Mitogen-activated protein kinase 1 OS=Mus musculus OX=10090 GN=Mapk1 PE=1 SV=3
P63086	Mitogen-activated protein kinase 1 OS=Rattus norvegicus OX=10116 GN=Mapk1 PE=1 SV=3
P28482	Mitogen-activated protein kinase 1 OS=Homo sapiens OX=9606 GN=MAPK1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000798 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR050117 all species →	Family	Mitogen-activated protein kinase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008349 all species →	Family	Mitogen-activated protein (MAP) kinase, ERK1/2	Interproscan
IPR003527 all species →	Conserved_site	Mitogen-activated protein (MAP) kinase, conserved site	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24055 all species →	MITOGEN-ACTIVATED PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0004707 all species →	Molecular Function	MAP kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04371	ERK, MAPK1_3; mitogen-activated protein kinase 1/3	EC:2.7.11.24	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001805-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

125.0Max TPM

61.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	53.00	78.20
polyp at pH7 6	18	18	52.48	78.71
coral polyp · control treatment	16	16	79.72	115.87
coral polyp · oil and dispersant treatment	16	16	78.30	120.54
coral polyp · oil treatment	16	16	66.37	125.03
coral polyp · dispersant treatment	16	16	64.29	95.19
Polyp	10	10	28.67	48.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.91
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.34
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.69
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.61
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.84
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.11
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.59
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.76
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.33
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.92
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.75
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.74
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.87
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.47
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.51
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.47
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	125.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.81
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	92.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.67
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.53
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.17
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	48.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	43.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	41.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	39.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	26.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.78
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.77
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.99
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.07

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.