Gene detail

Detailed information of OS493_001921-T1 in Lophelia pertusa

Genomic Location: scaffold_4:2945059...2953441
NR annotation: KAJ7375182.1, hypothetical protein OS493_001921 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZCF5	Ornithine aminotransferase, mitochondrial OS=Bos taurus OX=9913 GN=OAT PE=2 SV=1
P04181	Ornithine aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=OAT PE=1 SV=1
P29758	Ornithine aminotransferase, mitochondrial OS=Mus musculus OX=10090 GN=Oat PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003479 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202 all species →	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR049704 all species →	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan
IPR010164 all species →	Family	Ornithine aminotransferase	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR005814 all species →	Family	Aminotransferase class-III	Interproscan
IPR050103 all species →	Family	Class-III Pyridoxal-phosphate-dependent Aminotransferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11986 all species →	AMINOTRANSFERASE CLASS III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004587 all species →	Molecular Function	ornithine aminotransferase activity	Interproscan
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010121 all species →	Biological Process	arginine catabolic process to proline via ornithine	Interproscan
GO:0019544 all species →	Biological Process	arginine catabolic process to glutamate	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00819	rocD, OAT; ornithine--oxo-acid transaminase	EC:2.6.1.13	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001921-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,601.0Max TPM

570.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	662.86	1,601.00
polyp at pH7 6	18	18	646.43	1,162.76
coral polyp · control treatment	16	16	646.95	877.86
coral polyp · oil and dispersant treatment	16	16	610.44	839.41
coral polyp · oil treatment	16	16	594.60	1,017.55
coral polyp · dispersant treatment	16	16	466.94	738.31
Polyp	10	10	212.19	655.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,601.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,578.91
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	962.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	949.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	714.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	700.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	629.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	622.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	543.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	534.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	526.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	518.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	463.39
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	457.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	358.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	344.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	212.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	211.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,162.76
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,152.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,073.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,054.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	988.44
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	978.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	653.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	646.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	637.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	624.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	539.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	536.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	469.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	465.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	225.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	220.72
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	103.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	103.33
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	877.86
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	832.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	810.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	802.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	778.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	774.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	774.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	742.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	732.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	678.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	649.88
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	485.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	450.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	439.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	423.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	839.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	813.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	812.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	792.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	697.02
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	677.70
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	667.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	661.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	630.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	599.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	593.81
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	579.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	532.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	354.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	306.17
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	211.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,017.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	937.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	858.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	757.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	748.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	712.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	664.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	656.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	580.37
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	552.91
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	440.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	432.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	388.21
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	363.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	340.06
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	738.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	735.75
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	614.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	577.99
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	564.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	563.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	538.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	515.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	510.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	501.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	461.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	426.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	325.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	267.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.80
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	655.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	317.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	295.65
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	221.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	167.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	146.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	114.48
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	85.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	76.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	40.24

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.