Gene detail

Detailed information of OS493_001922-T1 in Lophelia pertusa

Genomic Location: scaffold_4:2961725...2967470
NR annotation: KAJ7375183.1, Sideroflexin-1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5A761	Sideroflexin-1 OS=Sus scrofa OX=9823 GN=SFXN1 PE=2 SV=1
Q9H9B4	Sideroflexin-1 OS=Homo sapiens OX=9606 GN=SFXN1 PE=1 SV=4
B2LU20	Sideroflexin-1 OS=Ovis aries OX=9940 GN=SFXN1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001625 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03820 all species →	SFXNs	Sideroflexins	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004686 all species →	Family	Tricarboxylate/iron carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11153 all species →	SIDEROFLEXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0015075 all species →	Molecular Function	monoatomic ion transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0022889 all species →	Molecular Function	obsolete serine transmembrane transporter activity	Interproscan
GO:0031305 all species →	Cellular Component	obsolete integral component of mitochondrial inner membrane	Interproscan
GO:0140300 all species →	Biological Process	serine import into mitochondrion	Interproscan
GO:1990542 all species →	Biological Process	mitochondrial transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001922-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001922-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

35.6Max TPM

15.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	13.26	30.34
polyp at pH7 6	18	16	12.45	28.04
coral polyp · control treatment	16	16	20.63	35.65
coral polyp · oil and dispersant treatment	16	16	17.95	30.72
coral polyp · oil treatment	16	16	14.25	27.36
coral polyp · dispersant treatment	16	16	19.05	29.72
Polyp	10	10	10.88	20.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.43
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.73
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.43
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.40
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.38
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.86
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.15
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.05
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.53
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.75
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.51
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.72
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.01
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.64
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.11
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.79
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.53
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.45
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.72
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.60
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.93
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.82
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.88
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.77
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.97
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.86
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.43
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.93

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.