Gene detail

Detailed information of OS493_001936-T1 in Lophelia pertusa

Genomic Location: scaffold_4:3072437...3076327
NR annotation: KAJ7375193.1, Acylpyruvase fahd1, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86I22	Oxaloacetate decarboxylase, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=fahd1 PE=3 SV=1
Q8R0F8	Oxaloacetate tautomerase FAHD1, mitochondrial OS=Mus musculus OX=10090 GN=Fahd1 PE=1 SV=3
Q2HJ98	Oxaloacetate tautomerase FAHD1, mitochondrial OS=Bos taurus OX=9913 GN=FAHD1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001377 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01557 all species →	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036663 all species →	Homologous_superfamily	Fumarylacetoacetase-like, C-terminal domain superfamily	Interproscan
IPR011234 all species →	Domain	Fumarylacetoacetase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11820 all species →	ACYLPYRUVASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0018773 all species →	Molecular Function	acetylpyruvate hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_001936-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001936-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

42.7Max TPM

17.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.34	31.20
polyp at pH7 6	18	18	17.31	24.04
coral polyp · control treatment	16	16	22.44	37.66
coral polyp · oil and dispersant treatment	16	16	15.58	30.54
coral polyp · oil treatment	16	16	20.81	42.69
coral polyp · dispersant treatment	16	16	16.12	29.75
Polyp	10	9	11.76	32.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.41
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.67
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.42
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.20
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.15
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.41
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.88
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.33
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.17
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.55
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.71
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.75
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.79
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.83
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.48
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.14
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.18
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	32.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.