Gene detail

Detailed information of OS493_001965-T1 in Lophelia pertusa

Genomic Location: scaffold_4:3385266...3385960
NR annotation: KAJ7375221.1, hypothetical protein OS493_001965 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AYQ8	Oxaloacetate tautomerase FAHD1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Fahd1 PE=1 SV=1
Q8R0F8	Oxaloacetate tautomerase FAHD1, mitochondrial OS=Mus musculus OX=10090 GN=Fahd1 PE=1 SV=3
Q93ZE5	Oxaloacetate tautomerase FAHD1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FAHD1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001377 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01557 all species →	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036663 all species →	Homologous_superfamily	Fumarylacetoacetase-like, C-terminal domain superfamily	Interproscan
IPR011234 all species →	Domain	Fumarylacetoacetase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11820 all species →	ACYLPYRUVASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0018773 all species →	Molecular Function	acetylpyruvate hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01557	FAHD1; acylpyruvate hydrolase	EC:3.7.1.5	Tyrosine metabolism	ko00350	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_001965-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

15.2Max TPM

6.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.85	15.23
polyp at pH7 6	18	18	8.76	12.81
coral polyp · control treatment	16	16	6.07	12.46
coral polyp · oil and dispersant treatment	16	16	3.94	9.70
coral polyp · oil treatment	16	16	6.24	12.17
coral polyp · dispersant treatment	16	15	2.78	6.53
Polyp	10	10	7.37	11.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.23
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.76
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.08
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.79
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.39
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.20
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.01
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.60
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.97
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.24
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.17
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.40
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.68
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.38

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.