Gene detail

Detailed information of OS493_002009-T1 in Lophelia pertusa

Genomic Location: scaffold_4:4007040...4015674
NR annotation: KAJ7375262.1, hypothetical protein OS493_002009 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000189 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18758 all species →	KDZ	Kyakuja-Dileera-Zisupton transposase	Family	Interproscan
PF18802 all species →	CxC1	CxC1 like cysteine cluster associated with KDZ transposases	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040521 all species →	Family	Kyakuja-Dileera-Zisupton transposase	Interproscan
IPR041320 all species →	Domain	CxC1-like cysteine cluster associated with KDZ transposases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33096 all species →	CXC2 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_002009-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002009-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002009-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

32.1Max TPM

9.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.55	32.11
polyp at pH7 6	18	17	9.76	22.51
coral polyp · control treatment	16	16	9.89	23.41
coral polyp · oil and dispersant treatment	16	16	6.87	11.87
coral polyp · oil treatment	16	15	9.72	15.61
coral polyp · dispersant treatment	16	16	2.90	4.71
Polyp	10	9	8.04	20.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.46
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.90
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.67
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.48
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.24
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.82
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.66
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.78
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.25
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.45
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.96
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.17
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.83
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.04
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.82
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.97
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.93
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.69
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.