Gene detail

Detailed information of OS493_002091-T1 in Lophelia pertusa

Genomic Location: scaffold_4:5011735...5014889
NR annotation: KAJ7375340.1, Protein canopy 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2B0	Protein canopy homolog 2 OS=Homo sapiens OX=9606 GN=CNPY2 PE=1 SV=1
Q9QXT0	Protein canopy homolog 2 OS=Mus musculus OX=10090 GN=Cnpy2 PE=1 SV=1
Q5M7D4	Protein canopy homolog 1 OS=Xenopus laevis OX=8355 GN=cnpy1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006771 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11938 all species →	DUF3456	TLR4 regulator and MIR-interacting MSAP	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042415 all species →	Family	Protein canopy homolog	Interproscan
IPR021852 all species →	Domain	Domain of unknown function DUF3456	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13341 all species →	MIR-INTERACTING SAPOSIN-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22936	CNPY1_2; protein canopy 1/2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002091-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

21.0Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.38	21.01
polyp at pH7 6	18	17	6.86	17.19
coral polyp · control treatment	16	16	7.17	10.80
coral polyp · oil and dispersant treatment	16	15	5.33	9.06
coral polyp · oil treatment	16	16	6.55	9.67
coral polyp · dispersant treatment	16	15	4.73	7.13
Polyp	10	9	6.74	15.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.01
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.38
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.73
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.17
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.23
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.90
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.90
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.72
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.45
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.83
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.43
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.