Gene detail

Detailed information of OS493_002092-T1 in Lophelia pertusa

Genomic Location: scaffold_4:5019461...5022394
NR annotation: KAJ7375341.1, glycosylceramidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09849	Lactase/phlorizin hydrolase OS=Oryctolagus cuniculus OX=9986 GN=LCT PE=1 SV=1
P09848	Lactase/phlorizin hydrolase OS=Homo sapiens OX=9606 GN=LCT PE=1 SV=3
W5PLZ6	Lactase/phlorizin hydrolase OS=Ovis aries OX=9940 GN=LCT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001722 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00232 all species →	Glyco_hydro_1	Glycosyl hydrolase family 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001360 all species →	Family	Glycoside hydrolase family 1	Interproscan
IPR018120 all species →	Active_site	Glycoside hydrolase family 1, active site	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10353 all species →	GLYCOSYL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008422 all species →	Molecular Function	beta-glucosidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002092-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002092-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

195.7Max TPM

23.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.44	94.93
polyp at pH7 6	18	18	22.30	60.50
coral polyp · control treatment	16	16	14.46	56.51
coral polyp · oil and dispersant treatment	16	16	31.32	195.73
coral polyp · oil treatment	16	15	36.69	124.03
coral polyp · dispersant treatment	16	16	16.47	78.15
Polyp	10	9	10.06	40.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	93.54
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.71
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.64
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.35
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.11
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.29
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.93
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.38
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.50
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.51
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.07
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.19
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	195.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.58
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	124.03
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	116.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.13
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.40
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.41
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.09
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.47
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.15
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.01
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.56
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.77
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	40.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	30.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.25
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.84
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.77
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.