Gene detail

Detailed information of OS493_002178-T1 in Lophelia pertusa

Genomic Location: scaffold_4:6252570...6257748
NR annotation: KAJ7375414.1, hypothetical protein OS493_002178 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010547 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18112 all species →	Zn-C2H2_12	Autophagy receptor zinc finger-C2H2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041641 all species →	Domain	CALCOCO1/2, zinc finger UBZ1-type	Interproscan

PANTHER

No PANTHER signature was detected for OS493_002178-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_002178-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11282	NAP1L4, NAP2; nucleosome assembly protein 1-like 4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002178-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

32.3Max TPM

13.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.30	18.95
polyp at pH7 6	18	18	10.33	15.77
coral polyp · control treatment	16	16	17.86	28.70
coral polyp · oil and dispersant treatment	16	16	18.01	32.34
coral polyp · oil treatment	16	16	14.16	22.42
coral polyp · dispersant treatment	16	16	12.79	20.50
Polyp	10	10	6.89	10.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.95
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.84
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.72
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.75
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.67
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.24
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.97
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.55
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.23
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.68
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.91
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.65
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.22
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.55
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.20
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.56
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.10
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.69
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.87
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.73
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.50
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.60
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.49
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.70
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.01
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.39
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.