Gene detail

Detailed information of OS493_002179-T1 in Lophelia pertusa

Genomic Location: scaffold_4:6258185...6264839
NR annotation: KAJ7375415.1, Uridine phosphorylase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CGR7	Uridine phosphorylase 2 OS=Mus musculus OX=10090 GN=Upp2 PE=1 SV=1
P52624	Uridine phosphorylase 1 OS=Mus musculus OX=10090 GN=Upp1 PE=1 SV=2
O95045	Uridine phosphorylase 2 OS=Homo sapiens OX=9606 GN=UPP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005681 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01048 all species →	PNP_UDP_1	Phosphorylase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010059 all species →	Family	Uridine phosphorylase, eukaryotic	Interproscan
IPR035994 all species →	Homologous_superfamily	Nucleoside phosphorylase superfamily	Interproscan
IPR000845 all species →	Domain	Nucleoside phosphorylase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43691 all species →	URIDINE PHOSPHORYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004850 all species →	Molecular Function	uridine phosphorylase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009166 all species →	Biological Process	nucleotide catabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009116 all species →	Biological Process	nucleoside metabolic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006218 all species →	Biological Process	uridine catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00757	udp, UPP; uridine phosphorylase	EC:2.4.2.3	Drug metabolism - other enzymes	ko00983	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002179-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

11.2Max TPM

5.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.64	9.94
polyp at pH7 6	18	16	6.76	9.72
coral polyp · control treatment	16	16	6.50	11.23
coral polyp · oil and dispersant treatment	16	16	4.94	9.64
coral polyp · oil treatment	16	16	6.48	10.76
coral polyp · dispersant treatment	16	16	5.16	9.56
Polyp	10	9	3.97	8.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.94
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.99
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.91
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.73
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.06
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.81
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.56
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.87
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.73
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.