Gene detail

Detailed information of OS493_002180-T1 in Lophelia pertusa

Genomic Location: scaffold_4:6268782...6281488
NR annotation: KAJ7375416.1, hypothetical protein OS493_002180 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UH92	Max-like protein X OS=Homo sapiens OX=9606 GN=MLX PE=1 SV=2
O08609	Max-like protein X OS=Mus musculus OX=10090 GN=Mlx PE=1 SV=1
Q2VPU4	MLX-interacting protein OS=Mus musculus OX=10090 GN=Mlxip PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007986 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR052207 all species →	Family	Max-like/E-box-binding transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15741 all species →	BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002180-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002180-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

82.6Max TPM

38.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	29.29	41.47
polyp at pH7 6	18	18	29.62	37.87
coral polyp · control treatment	16	16	51.43	82.61
coral polyp · oil and dispersant treatment	16	16	48.70	70.20
coral polyp · oil treatment	16	16	47.07	64.73
coral polyp · dispersant treatment	16	16	32.58	46.67
Polyp	10	10	23.82	35.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.34
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.60
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.84
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.86
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.26
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.56
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.61
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.20
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.91
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.71
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.18
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.20
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.93
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.98
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.72
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.54
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.61
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.32
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.11
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.23
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.74
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	35.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	28.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	27.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	26.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	26.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	22.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.94
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.