Detailed information of OS493_002238-T1 in Lophelia pertusa

Genomic Location: scaffold_4:7374123...7377466
NR annotation: KAJ7375465.1, hypothetical protein OS493_002238 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9BYX4Interferon-induced helicase C domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Q8R5F7Interferon-induced helicase C domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1
Q99J87ATP-dependent RNA helicase DHX58 OS=Mus musculus OX=10090 GN=Dhx58 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001752 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271
all species →		Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF11648
all species →		RIG-I_C-RDC-terminal domain of RIG-IDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650
all species →		DomainHelicase, C-terminal domain-likeInterproscan
IPR021673
all species →		DomainRIG-I-like receptor, C-terminal regulatory domainInterproscan
IPR038557
all species →		Homologous_superfamilyRIG-I-like receptor, C-terminal domain superfamilyInterproscan
IPR051363
all species →		FamilyRIG-I-like Receptor (RLR) HelicaseInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14074
all species →		HELICASE WITH DEATH DOMAIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_002238-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_002238-T1 global co-expression network
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