Gene detail

Detailed information of OS493_002257-T1 in Lophelia pertusa

Genomic Location: scaffold_4:7668601...7671312
NR annotation: KAJ7375483.1, Cytochrome c oxidase subunit 7A- protein, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011090 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02238 all species →	COX7a	Cytochrome c oxidase subunit VII	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036539 all species →	Homologous_superfamily	Cytochrome c oxidase, subunit VIIa superfamily	Interproscan
IPR039297 all species →	Family	Cytochrome c oxidase subunit VII	Interproscan

PANTHER

No PANTHER signature was detected for OS493_002257-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005751 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex IV	Interproscan
GO:0006123 all species →	Biological Process	mitochondrial electron transport, cytochrome c to oxygen	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02270	COX7A; cytochrome c oxidase subunit 7a	-	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002257-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

496.2Max TPM

171.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	196.81	311.97
polyp at pH7 6	18	18	246.03	322.90
coral polyp · control treatment	16	16	144.25	403.19
coral polyp · oil and dispersant treatment	16	16	141.12	496.21
coral polyp · oil treatment	16	16	136.85	185.81
coral polyp · dispersant treatment	16	16	91.74	138.27
Polyp	10	10	271.84	462.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	311.97
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	269.95
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	263.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	247.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	243.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	231.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	212.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	201.88
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	172.37
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	170.69
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	169.23
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	167.73
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	163.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	162.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	156.59
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	146.74
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	126.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	124.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	322.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	322.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	314.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	308.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	307.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	289.19
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	267.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	245.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	244.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	234.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	232.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	221.52
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	208.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	198.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	194.92
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	194.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	174.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	145.59
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	403.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	176.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	173.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	141.98
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.63
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	133.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	133.55
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.54
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	112.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.02
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	496.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	142.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	142.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.88
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	185.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	166.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	146.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	144.62
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	143.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	141.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	140.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	136.17
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	135.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	132.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	128.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	127.45
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	123.02
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	119.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	118.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	138.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	128.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	120.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.94
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.41
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.47
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.14
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	462.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	358.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	307.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	272.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	262.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	230.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	219.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	214.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	195.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	195.03

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.