Gene detail

Detailed information of OS493_002281-T1 in Lophelia pertusa

Genomic Location: scaffold_4:7943201...7944980
NR annotation: KAJ7375507.1, hypothetical protein OS493_002281 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58742	Aladin OS=Mus musculus OX=10090 GN=Aaas PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004765 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_002281-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR045139 all species →	Family	Aladin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14494 all species →	ALADIN/ADRACALIN/AAAS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_002281-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_002281-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

169.9Max TPM

19.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	40.56	164.79
polyp at pH7 6	18	16	40.18	169.92
coral polyp · control treatment	16	16	8.06	27.25
coral polyp · oil and dispersant treatment	16	16	5.47	17.97
coral polyp · oil treatment	16	16	9.71	44.28
coral polyp · dispersant treatment	16	15	5.68	20.79
Polyp	10	9	22.97	82.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	164.79
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	156.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.94
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.86
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.71
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.28
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.71
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	169.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	168.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.53
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.64
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.92
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.89
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.15
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.18
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.62
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.97
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.59
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.11
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.88
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.54
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.04
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.48
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	82.98
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	49.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	27.98
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.